Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00097 ATGGGCTGTATCTGTTCTAAGGTTCTAGCGGATGAGTGTAGTGACCAGGAATATGATATCTCCAAAAGAGCTTATTCCGCCAGAAATCATCTCTCTGAATTGAAAATTTCAGGAGCTGGCTCTCTGAAACTGGAGAAGAATTGGGAAAATGATAGACTGGATTGTGGTGATGTTAAAGTTATGTTGTTTGATTCGAAGGTAAATGGTGAAGTTCCTGAGATCCCTGATGCTACCATTGTCAATCATCCATGTATGGCAAAGATTCCAAAGGCTATTGAGGCCGAGCAGGTCGCTGCCGGGTGGCCGAGTTGGCTGGCTATGGCGGCTGGTGAGGCTATCAAAGACTGGTTGCCAAAACGTGCAAATAACTTCATCAAGCTTGAGAAAATTGGGCAGGGAACTTATAGCAGCGTGTATAAAGCTCGTGATATCGTTCGAGATAAAGTTGTGGCGTTGAAAAGGGTCACGTTCGACAATCAAGATACCGAGAGTATCAAGTTTATGGCAAGGGAAATCCTTGTTTTGCGAAGGCTTGATCATCCAAATATAGTTAAGTTGGAAGGTTTGATCATATCACAAGCATCATGTACCATGTATCTTGTTTTTGAATATATGGAACATGATCTTACTGGACTTGCATCACGCCCTGGCACGTCGTTCACCGAACCACAGATGAAGTGTTACATGAAGCAACTTTTGAGTGGACTTAATCACTGTCACAGCAATGGGGTTTTGCATCGAGACATAAAGGGCTCGAATCTTCTTATCGACAACAATGGCGTTTTGAAGATAGCGGATTTCGGGTTGTCAGTTTTCTTTGATTCACAGTCGACAGTTCCCATGACGAGTCGTGTAGTAACTCTCTGGTATCGACCACCGGAGCTTTTACTCGGAGCATCTCAATATGGAGCTGAAGTTGATTTATGGAGCGCTGGTTGCATTCTAGGAGAGTTATATGCAGGCAAGCCTATCTTGCCAGGAAAAACAGAGGTTGAACAACTACACAAGATATTTAAGCTATGTGGTTCCCCCTCCAAGGAATATTGGAACAATTCGCACTTGAAGCATTCAGCAAGCATGAAGCCTCCACAGGCGTACGAAAGATGTCTTCGAGAACAATATAACGATTTGCCTCGTGCTGCTGTTGAGCTTATGGACACTTTGCTGTCTATCGATCCTGCAGGGCGAGGAACTGCGGCGTCTGCACTCAACAGTGAGTTCTTTACCACAAGGCCTTTACCATGCGATCCTTCAAGTTTGCCAAAATATCCTCCCAGCAAAGAGATCGACTCGAAAATGCGCGAAGAGGAAGCAAGGAGGCAACGAGTAGTATTCGGTGGAAAAAACCGAACAATTGACTCGGAAACGAAAGGACTGAAGCAATCATGGGTAGTTCCTTCAGCTAAGGCGAACGCTGAGTTGGTTATGTCACTATTGAGAAAACAAAGTCGTTCGAGCTCGACGTGTTCTTACAGTTTGGTGTCCAAGAGAACCTCAAATTCAGGACCTATAACTCAGGGACCAAGATTTCCAAACTCCAAAAGGGAGAAACATATTTCTATGATTCCGAGCGAGTATCTAACGTCGTCTGGTTCTATTGAATTTGCTTCTTACAAACATGTCGAAGAAGGAAAGCGAGCTCCAAAGCCAGAATCGTCGAGTCAAGACAAAAGCTCTGCAGACGAGCTCATCAAAAAGCTGCACAGAGACCAACTTGGCTCTTGTAAGTTGGAACATTCGAAAGCGTCAGCTCTGATAGTTAGCTAA 1767 44.43 MGCICSKVLADECSDQEYDISKRAYSARNHLSELKISGAGSLKLEKNWENDRLDCGDVKVMLFDSKVNGEVPEIPDATIVNHPCMAKIPKAIEAEQVAAGWPSWLAMAAGEAIKDWLPKRANNFIKLEKIGQGTYSSVYKARDIVRDKVVALKRVTFDNQDTESIKFMAREILVLRRLDHPNIVKLEGLIISQASCTMYLVFEYMEHDLTGLASRPGTSFTEPQMKCYMKQLLSGLNHCHSNGVLHRDIKGSNLLIDNNGVLKIADFGLSVFFDSQSTVPMTSRVVTLWYRPPELLLGASQYGAEVDLWSAGCILGELYAGKPILPGKTEVEQLHKIFKLCGSPSKEYWNNSHLKHSASMKPPQAYERCLREQYNDLPRAAVELMDTLLSIDPAGRGTAASALNSEFFTTRPLPCDPSSLPKYPPSKEIDSKMREEEARRQRVVFGGKNRTIDSETKGLKQSWVVPSAKANAELVMSLLRKQSRSSSTCSYSLVSKRTSNSGPITQGPRFPNSKREKHISMIPSEYLTSSGSIEFASYKHVEEGKRAPKPESSSQDKSSADELIKKLHRDQLGSCKLEHSKASALIVS 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 498270 501450 - CmaCh02G000970.1 Cma02g00097 287848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00097 588 MobiDBLite consensus disorder prediction 416 438 - -
Cma02g00097 588 SMART serkin_6 124 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00097 588 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 72 525 - -
Cma02g00097 588 CDD STKc_CDK9_like 124 408 - -
Cma02g00097 588 ProSitePatterns Protein kinases ATP-binding region signature. 130 153 IPR017441 GO:0005524
Cma02g00097 588 Gene3D Phosphorylase Kinase; domain 1 110 206 - -
Cma02g00097 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Cma02g00097 588 SUPERFAMILY Protein kinase-like (PK-like) 119 416 IPR011009 -
Cma02g00097 588 MobiDBLite consensus disorder prediction 493 515 - -
Cma02g00097 588 Gene3D Transferase(Phosphotransferase) domain 1 207 446 - -
Cma02g00097 588 Pfam Protein kinase domain 125 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00097 588 PANTHER CELL DIVISION PROTEIN KINASE 72 525 - -
Cma02g00097 588 MobiDBLite consensus disorder prediction 493 508 - -
Cma02g00097 588 ProSiteProfiles Protein kinase domain profile. 124 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00097 588 MobiDBLite consensus disorder prediction 540 564 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00097 Cma11g01881 CCT
Cma02g00097 Cma19g00989 CCT
Cma02g00097 Cma11g01881 ECH
Cma02g00097 Cma19g00989 ECH
Cma02g00097 Cma20g00202 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00097 Cma-Chr2:498270 Cma04g00549 Cma-Chr4:2787202 0 dispersed
Cma02g00097 Cma-Chr2:498270 Cma20g00202 Cma-Chr20:955550 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68315 PF00069 Pkinase 6.50E-69 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00097 - - bhj:120088593 900.197