Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00104 ATGCTCACGCAAATGCACCTCCTTCTCCCCCGCCGTGGTTTTGGCCTCATTGGGGCTATTTTCTTTGCCATGGCCGTCCTTGAGTGGTTCACGGCGGTGGCTCAGCTCCAACACCGTGTGCTGGATTTACATTGGCTTCCTGCCACCGCCACGTGGTACGGAAGCCCCGAGGGCGACGGTAGCGACGGTGGAGCATGTGGGTATGGAAATTTAGTGGATGTGAGGCCTCTAAAGGCCAGAGTTGGGGCTGTGAGTCCAATTCTGTTCAAAAACGGTGAAGGGTGTGGAGCATGTTACAAGGTGAAATGTCTAGACCAGAGGATTTGCTCTAGACGAGCCGTTACTGTAATCATCACCGACGAATGCCCCGGTGGGTATTGTTCTAATGGAAATACCCACTTCGATCTCAGCGGCGCTGCCTTTGGCCGTATGGCCATCGCCGGTGAAGGTGGGCAGCTCAGAAACAGAGGAGAAATCCCAGTAATTTACCGACGAACTCCCTGTAAGTATCGAGGCAAGAACATTGCCTTCCATGTCAATGAAGGCTCCACAGATTACTGGCTCTCAGTCTTGGTTGAATTCGAGGATGGGGATGGAGACATCGGTGCAATGCAAATAAAAGAAGGGAACTCGAGGGAGTGGCTGGAAATGAAGCATTTATGGGGAGCAAATTGGTGCATAATTGGAGGGCCTTTAAAGGGTCCATTTTCAGTGAGATTAACGACATTATCTACAGGAAGAACAGTGGCAGCTAGGGATATAATTCCAAGGAATTGGTCTCCAAAAGCCACTTACACTTCTCGCCTTAATTTCTTCTCTTGA 822 50.36 MLTQMHLLLPRRGFGLIGAIFFAMAVLEWFTAVAQLQHRVLDLHWLPATATWYGSPEGDGSDGGACGYGNLVDVRPLKARVGAVSPILFKNGEGCGACYKVKCLDQRICSRRAVTVIITDECPGGYCSNGNTHFDLSGAAFGRMAIAGEGGQLRNRGEIPVIYRRTPCKYRGKNIAFHVNEGSTDYWLSVLVEFEDGDGDIGAMQIKEGNSREWLEMKHLWGANWCIIGGPLKGPFSVRLTTLSTGRTVAARDIIPRNWSPKATYTSRLNFFS 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 537137 538831 + CmaCh02G001040.1 Cma02g00104 287855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00104 273 SUPERFAMILY Barwin-like endoglucanases 44 172 IPR036908 -
Cma02g00104 273 SMART dpbb_1 81 163 IPR007112 -
Cma02g00104 273 Gene3D - 170 272 IPR036749 -
Cma02g00104 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 267 IPR007117 -
Cma02g00104 273 Pfam Lytic transglycolase 83 162 IPR009009 -
Cma02g00104 273 PANTHER EXPANSIN-LIKE PROTEIN B1 21 272 - -
Cma02g00104 273 Pfam Expansin C-terminal domain 175 256 IPR007117 -
Cma02g00104 273 Gene3D - 32 169 IPR036908 -
Cma02g00104 273 SUPERFAMILY PHL pollen allergen 173 267 IPR036749 -
Cma02g00104 273 PRINTS Major pollen allergen Lol pI signature 83 94 IPR005795 GO:0005576|GO:0019953
Cma02g00104 273 PRINTS Major pollen allergen Lol pI signature 123 138 IPR005795 GO:0005576|GO:0019953
Cma02g00104 273 PRINTS Major pollen allergen Lol pI signature 145 160 IPR005795 GO:0005576|GO:0019953
Cma02g00104 273 PRINTS Major pollen allergen Lol pI signature 177 192 IPR005795 GO:0005576|GO:0019953
Cma02g00104 273 PRINTS Major pollen allergen Lol pI signature 193 208 IPR005795 GO:0005576|GO:0019953
Cma02g00104 273 PRINTS Major pollen allergen Lol pI signature 243 260 IPR005795 GO:0005576|GO:0019953
Cma02g00104 273 PANTHER EXPANSIN-B3 21 272 - -
Cma02g00104 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 173 IPR007112 -
Cma02g00104 273 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Cma02g00104 273 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Cma02g00104 273 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Cma02g00104 273 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576
Cma02g00104 273 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Cma02g00104 273 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00104 Cma11g01872 CCT
Cma02g00104 Cma20g00193 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00104 Cma-Chr2:537137 Cma06g00956 Cma-Chr6:6481885 4.40E-78 dispersed
Cma11g01872 Cma-Chr11:12428645 Cma02g00104 Cma-Chr2:537137 6.86E-150 wgd
Cma02g00104 Cma-Chr2:537137 Cma20g00193 Cma-Chr20:916333 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00104 K20628 - csv:101202998 491.5