Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00117 ATGGGGATCTGTTTGTCTACTGGCAATCAGTGTAGCTGCAATGGGGGAACCAATGGAGAGAGGATTTCTGGATCCTGTTTGGGGATTAGAGTTTCTGGCCGGATTGAAAGAAAGAGAACATTTTCAGATCATACTTTTTCTATTCAGCATTTAAATTCTATACCGAATAGGCTTGTTTATAATGGGAAGACTCGAAATTCTTGCATTTTCACTCAGCAGGGTCGCAAGGGGATAAATCAGGATGCCATGGTTGTGTGGGAAGACTTCATATCAGATGGTGCAATTTTTTGTGGGGTATTTGATGGTCACGGCCCTCATGGTCATGTCGTTGCACGAAAGGTTAGAGATGTTCTTCCAAGAAAGCTGGAGTCATCCTGGGAGTCATCTCAGTTAAAGCATAATAGAACAGATAGAACTTCTTGTTTCCGTTGGAGTCAGAAGAATTCAGCAGATGGTGAACGACACGACATGGATGGTTCGCAGGAGGATAAATCAAGTTCTTTATGGAGAAAAGCTTTTCTCAAATCATATAAAGCCATGGATAAGGAGCTCAAATCTCATCCCAAAGTGGACTGTTTCTGCAGTGGTTGTACTGCGGTCACTTTGGTTAAGCAGGGTTCCGATCTATTCGTGGGAAGTATCGGGGATTCTCGAGCAATTCTTGGATCTAAAGATAGCAGAGATTCGCCTGTAGCAACCCAATTGACAGTAGATCTAAAGCCTGATTTACCCAGAGAAGCTGAAAGGATAAAGAAGTGTAAAGGAAGGGTGTTTGCATTGCAAGATGAGCCAGAAGTGCCAAGAGTGTGGCTGCCATTTGACAATGCACCTGGCTTAGCCATGGCTCGAGCGTTTGGCGACTTCTGTTTGAAGGACTATGGAGTTATCTCTATTCCCGAATTTTCGCACCGCGTGCTTACAGACAACGATCTGTTTGTTGTCCTTGCTTCAGATGGGGTTTGGGACGTATTGAGCAACCAAGAGGTGGTTGAGATAGTTCATTCTGCCCCAACTCGCTCATCGGCAGCTCGGATGGTGGTAGACTCGGCTGCTCGTGAATGGAAGCTCAAGTACCCTACTTCAAAAATGGACGACTGTGCAGTCGTTTGCTTATTCTTGGACGGGAAAATGGATTCAAATTCAGAAAATGAAGAACAATCTCTTGCAACTTTTCAAACTGATGAAATGGATGACACGGAAAATTCAGATGAAGAGCGGAGGTTGGAGCCAAGTTTACAGAGGAATAATACGGTCCGATCGTCGGAAGAAAAAGAGCAAATCGGAGGGCGATCTTCACAAAGCGAAGAGAACGGAGAATCAATCTGTGCTAAAGATGAGAATTGGTTAGGATTGGAGGGTGTAACAAGAGTAAACTCCCTGATTCAACTTCCTAGATTTTCTTGTCCTACGAACATAGTTGGAGAAGGTTGTAATGGCGGATGA 1443 44.21 MGICLSTGNQCSCNGGTNGERISGSCLGIRVSGRIERKRTFSDHTFSIQHLNSIPNRLVYNGKTRNSCIFTQQGRKGINQDAMVVWEDFISDGAIFCGVFDGHGPHGHVVARKVRDVLPRKLESSWESSQLKHNRTDRTSCFRWSQKNSADGERHDMDGSQEDKSSSLWRKAFLKSYKAMDKELKSHPKVDCFCSGCTAVTLVKQGSDLFVGSIGDSRAILGSKDSRDSPVATQLTVDLKPDLPREAERIKKCKGRVFALQDEPEVPRVWLPFDNAPGLAMARAFGDFCLKDYGVISIPEFSHRVLTDNDLFVVLASDGVWDVLSNQEVVEIVHSAPTRSSAARMVVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSNSENEEQSLATFQTDEMDDTENSDEERRLEPSLQRNNTVRSSEEKEQIGGRSSQSEENGESICAKDENWLGLEGVTRVNSLIQLPRFSCPTNIVGEGCNGG 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 588445 591802 + CmaCh02G001170.1 Cma02g00117 287868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00117 480 MobiDBLite consensus disorder prediction 143 163 - -
Cma02g00117 480 CDD PP2Cc 72 373 IPR001932 -
Cma02g00117 480 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 461 - -
Cma02g00117 480 MobiDBLite consensus disorder prediction 148 163 - -
Cma02g00117 480 ProSiteProfiles PPM-type phosphatase domain profile. 66 373 IPR001932 -
Cma02g00117 480 MobiDBLite consensus disorder prediction 381 439 - -
Cma02g00117 480 SUPERFAMILY PP2C-like 60 375 IPR036457 -
Cma02g00117 480 SMART PP2C_4 55 371 IPR001932 -
Cma02g00117 480 PANTHER ALPHABET, ISOFORM E-RELATED 1 461 - -
Cma02g00117 480 MobiDBLite consensus disorder prediction 403 430 - -
Cma02g00117 480 Pfam Protein phosphatase 2C 152 350 IPR001932 -
Cma02g00117 480 Gene3D - 54 375 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00117 Cma11g01867 CCT
Cma02g00117 Cma19g00978 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00117 Cma-Chr2:588445 Cma16g01014 Cma-Chr16:7794965 1.55E-148 dispersed
Cma11g01867 Cma-Chr11:12414538 Cma02g00117 Cma-Chr2:588445 0 wgd
Cma19g00978 Cma-Chr19:8542875 Cma02g00117 Cma-Chr2:588445 0 wgd
Cma02g00117 Cma-Chr2:588445 Cma20g00555 Cma-Chr20:2692702 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00117 - - cmax:111469610 983.015