Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00129 ATGGCATGGAATTCCTTCTACAACAGAGCCTCTAAGGCTTATCACAACCATCCCAACATCTCCAAGCTCCTCGTCGTCTTCGCAGCCAGTGGAGGTGGGCTGGTGGCAAGTACTAATGCCAAATCTCTGTACCCTTCTGCATTTGCTGATGCCGTCCAACAAGATGGTGATTGGAGGAAGAAGAAGAAGAAGAAGGTGGTGGTGCTTGGAACAGGATGGGCCGGCACCAGCTTCTTGAAGAACCTCAAGAGCTCCTCTTATGATGTTCATGTCATTTCCCCTCATAATTACTTCGCTTTCACCCCTTTGCTTCCTAGTGTCACTTGTGGCACCGTCGAGGCACGCAGCATTGTCGAACCAATTCGTAGCATCACCAAGAAGAAAGGATTGAGCATTGAATTTAGGGAAGCTGAGTGTTATAAGATAGATGCAGAGAACAAGAAGGTGTTCTGTCGATCAACTCAAGACACGAACTTGGGTGGCAAGGAAGAGTTTTCAGTGGACTACGACTATCTGATAGTAGCCATGGGAGCTAAATCCAACACTTTCAACACACCAGGAGTAGAGGAAAATGCTCATTTCTTGAAGGGAGTGGAAGATGCTCAGCAGATTCGACAGTCGGTAATCGATTGTTTCGAGCGAGCCAGCCTTCCAAATCTAAGTGAAGAAGAGAAGAAGAGAACCCTTCACTTTGTTATAGTTGGAGGAGGTCCAACAGGAGTGGAATTTGCAGCAGAACTTCATGACTTTGCTGCAGAGGATTTGGCAGAGTTGTATCCTTCATTGAAAGAATACGTGAAAATCACCCTCCTAGAGGCAGGCGATCATATTTTGAACATGTTTGACAAGAGGATTACAGCCTTTGCTGAAGACAAGTTTCAAAGAGATGGGATTAACTTAAAAACTGGTTCCATGGTTGTGAAAGTAACTGATAAGGAAATCTCCACAAAAGAAAGAGCAACCGGTGAGTTTGTGTCTGTTCCTTATGGAATGGTTGTCTGGTCCACCGGCATCGGTCCTCGGCCTCAAGTCGTCGACTTCATGAAGCAGATTGACGAGCTTTGGTTACTGATGAATGGCTAA 1083 45.8 MAWNSFYNRASKAYHNHPNISKLLVVFAASGGGLVASTNAKSLYPSAFADAVQQDGDWRKKKKKKVVVLGTGWAGTSFLKNLKSSSYDVHVISPHNYFAFTPLLPSVTCGTVEARSIVEPIRSITKKKGLSIEFREAECYKIDAENKKVFCRSTQDTNLGGKEEFSVDYDYLIVAMGAKSNTFNTPGVEENAHFLKGVEDAQQIRQSVIDCFERASLPNLSEEEKKRTLHFVIVGGGPTGVEFAAELHDFAAEDLAELYPSLKEYVKITLLEAGDHILNMFDKRITAFAEDKFQRDGINLKTGSMVVKVTDKEISTKERATGEFVSVPYGMVVWSTGIGPRPQVVDFMKQIDELWLLMNG 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 623564 624904 + CmaCh02G001290.1 Cma02g00129 287880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00129 360 SUPERFAMILY FAD/NAD(P)-binding domain 63 282 IPR036188 -
Cma02g00129 360 PANTHER NADH DEHYDROGENASE 4 352 IPR045024 GO:0003954|GO:0006116
Cma02g00129 360 PRINTS FAD-dependent pyridine nucleotide reductase signature 24 43 - -
Cma02g00129 360 PRINTS FAD-dependent pyridine nucleotide reductase signature 169 187 - -
Cma02g00129 360 PRINTS FAD-dependent pyridine nucleotide reductase signature 230 248 - -
Cma02g00129 360 Gene3D - 54 355 - -
Cma02g00129 360 Pfam Pyridine nucleotide-disulphide oxidoreductase 64 345 IPR023753 GO:0016491
Cma02g00129 360 SUPERFAMILY FAD/NAD(P)-binding domain 228 343 IPR036188 -
Cma02g00129 360 PANTHER - 4 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00129 Cma-Chr2:623564 Cma13g00678 Cma-Chr13:6257337 3.24E-165 dispersed
Cma19g00965 Cma-Chr19:8488705 Cma02g00129 Cma-Chr2:623564 2.33E-156 wgd
Cma02g00129 Cma-Chr2:623564 Cma03g00483 Cma-Chr3:4824553 7.29E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00129 K03885 - csv:101209855 632.869