Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00147 ATGAATCAATTATTATATTCTCAAATGTTATATAGGCCAAAGACTGAAACAGGTGCTGCTGCATCTTCCTCCAAAGCTTGCAGAGAGAAATTGAGAAGAGATAAGCTGAATGAAAGTTTCTTGGAATTGGCTGCTGTCCTTGAACCTGGAAAACCACCCAAAACAGACAAGGTTGCAATCTTGAGCGATGCCATCAGGATGGTGACGGATTTACAAAGTGAAACCCAGAAGCTGAAACAATCTAAGGAGGATTTGAAGGCAAAAATCAAAGAATTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAAAGAAAAGTTGGAACTGCAAATCAAAGGGGTAAATACTCGAGCAGCTGACATCCACCGTCCTCCTCCTACACTGTCACCTGCATTTACAGCACAAGGCCAAGCTGCTGGTAACAAGCTGATGCCTTTCATTGGTTATCCTGGCATCGCCATGTGGCAGTTCTTGCCACCTGCAGCCGTCGACATATCTCAGGATCATGTGCTCCGCCCACCTGTTGCTTAA 549 44.08 MNQLLYSQMLYRPKTETGAAASSSKACREKLRRDKLNESFLELAAVLEPGKPPKTDKVAILSDAIRMVTDLQSETQKLKQSKEDLKAKIKELKVEKNELRDEKQRLRAEKEKLELQIKGVNTRAADIHRPPPTLSPAFTAQGQAAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 699901 701579 + CmaCh02G001470.1 Cma02g00147 287898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00147 182 Coils Coil 68 123 - -
Cma02g00147 182 PANTHER BHLH TRANSCRIPTION FACTOR 13 182 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cma02g00147 182 SMART finulus 26 77 IPR011598 GO:0046983
Cma02g00147 182 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 20 71 IPR011598 GO:0046983
Cma02g00147 182 Gene3D - 12 69 IPR036638 GO:0046983
Cma02g00147 182 CDD bHLH_AtILR3_like 25 100 - -
Cma02g00147 182 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 25 96 IPR036638 GO:0046983
Cma02g00147 182 Gene3D arf6 gtpase in complex with a specific effector, jip4 70 124 - -
Cma02g00147 182 Pfam Helix-loop-helix DNA-binding domain 24 72 IPR011598 GO:0046983
Cma02g00147 182 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 13 182 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00147 Cma20g00638 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00147 Cma-Chr2:699901 Cma20g00638 Cma-Chr20:2971125 4.96E-98 dispersed
Cma01g01152 Cma-Chr1:8424445 Cma02g00147 Cma-Chr2:699901 1.63E-71 wgd
Cma02g00147 Cma-Chr2:699901 Cma09g00924 Cma-Chr9:4612273 1.76E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34411 PF00010 HLH 2.50E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00147 - - cpep:111794592 333.183