Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00163 ATGTTCCAGCCAAGTATTTTTGACGACGGTAAGCTCCTCCCCTTAGACATGCCTCAAAACACTTCCGATAGCGATTTTGCTCGAATCCGAGACGATGATTTCGATAGCGCTACTAAATCTGGTAGCGACAACAATCATGAACTTGCCTCGGGTGATGATCAAGACCCTCGTCCTAAAAAGAAGCGTTATCATCGTCATACTCAACATCAGATTCAAGAAATGGAAGCTTTCTTCAAGGAGTGTCCTCACCCTGATGACAAACAAAGGAAGGAATTAAGCAGGGAATTAGGGTTGGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAACGTACTCAAATGAAGAATCAACATGAACGCCATGAGAACACCCAGCTTCGAACCGAAAATGAGAAGCTTCGAGCTGATAACATGAGATATAGAGAAGCTCTTAGCAATGCCTCGTGCCCTAATTGCGGTGGCCCGACTGCCATTGGTGAAATGTCCTTCGATGAACATCATCTTCGACTCGAAAATGCCCGTCTCCGCGAAGAGATTGATCGCATATCCGCAATAGCTGCAAAATATGTGGGAAAGCCAGTGGTGAACTACCCTCTACTATCTCCACCAGTTCCATCTCGACCATTAGAGCTCGGAATGGGCAACTTCGGACCACAATCAGGTTTAGGAGGAGACATCTACGGTTCGGCTGGTGACCTAATCCGATCCATCAGTGCTCCAACCGAGGCGGACAAGCCGATGATCATCGAGCTAGCAGTTGCAGCCATGGAAGAGCTCACTAGAATGGCTCAACTAGGCGAGCCCTTATGGATGACTAGTCTAGATGGGTCCACTAATGTGCTTAATGAAGATGAGTACTTGAGAACGTTTCCAAGAGGCATTGGGCCTAAGCCATCTGGGTTTAAATGTGAAGCCTCACGTGAATCAGCTGTTGTTATCATGAACCATATTAATCTTGTTGAGATTCTCATGGACGTGAATCAATGGTCAACTTTATTCTCTGGAATTGTGTCAAGAGCCATGACACTTGAAGTGTTGTCAACTGGAGTAGCTGGAAATTACAATGGAGCTTTACAAGTGATGACATCGGAATTTCAAGTTCTGTCGCCATTAGTTCCAACTCGGGAGAGCTACTACGTTCGATATTGCAAACAACACGTGGACGGGACGTGGGCGGTGGTCGATGTTTCATTGGACGATCTTCGCCCTACTCCTGGATTAAGGTGCCGACGAAGACCGTCCGGTTGTTTGATCCAAGAAATGCCTAATGGTTATTCAAAGGTTACATGGGTTGAGCACGTTGAGGTTGATGATAGAGGAGTTCATAGTCTTTATAAGCAGCTGGTGAGCTCCGGCCAAGCTTTTGGAGCCAAGCGATGGGTTACAACCTTAGACCGCCAATGTGAACGGCTTGCCAGTGCCATGGCCACCAACATACCCACCGGTGATGTTGGAGTGATAACGAATCAAGAAGGGAGGAAGAGCATGCTGAAGCTGGCTGAGAGAATGGTGATAAGCTTCTGTGCTGGTGTGAGCGCCTCCACGACTCACACATGGACTACTTTGTCGGGTACCGGTGCCGACGATGTTCGAGTCATGACCCGAAAGAGTATCGATGACCCCGGAAGACCTCCGGGTATTGTCCTTAGTGCTGCAACTTCCTTCTGGCTTCCCATTCCACCTAAGAGAATCTTTGATTTTCTCCGTGACGAGAACTCTCGAAGTGAGTGGGATATTCTGTCGAATGGTGGAGTAGTTCAAGAAATGGCGCACATTGCCAACGGTCGCGACACGGGCAACTGCGTTTCTCTTCTACGTGTAAATAGTGCAAATTCAAGCCAAAGCAACATGCTGATCCTGCAAGAAAGCTGCACAGACCCAACAGCTTCATTCGTCATCTACGCTCCGGTCGACATCGTTGCAATGAACGTCGTCCTCAACGGTGGCGATCCCGACTATGTCGCGCTTCTCCCCTCCGGGTTCGCCATTCTTCCAGACGGCACGGCAGAGACTGCCGCCGGTGGTTCACTCCTGACGGTGGCATTTCAGATTCTGGTGGATTCGGTGCCAACAGCAAAACTGTCACTTGGGTCAGTTGCAACGGTGAACAATCTGATTGCTTGTACGGCGGAGAGGATTAAAGCTTCTTTGTCATTATTTGGGAGAAGTCAAGAACGCACCCTGCAACAAAAAAACAATGGAGAGAGTGTTTTAGGGGTTCGGGCATTGACTTCCTCGAACGGAGTAAAGGCTGAAACGACAAGAAACAAGAACCAAATCATCTAA 2286 48.16 MFQPSIFDDGKLLPLDMPQNTSDSDFARIRDDDFDSATKSGSDNNHELASGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPPVPSRPLELGMGNFGPQSGLGGDIYGSAGDLIRSISAPTEADKPMIIELAVAAMEELTRMAQLGEPLWMTSLDGSTNVLNEDEYLRTFPRGIGPKPSGFKCEASRESAVVIMNHINLVEILMDVNQWSTLFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSEFQVLSPLVPTRESYYVRYCKQHVDGTWAVVDVSLDDLRPTPGLRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHSLYKQLVSSGQAFGAKRWVTTLDRQCERLASAMATNIPTGDVGVITNQEGRKSMLKLAERMVISFCAGVSASTTHTWTTLSGTGADDVRVMTRKSIDDPGRPPGIVLSAATSFWLPIPPKRIFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTASFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTAETAAGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTAERIKASLSLFGRSQERTLQQKNNGESVLGVRALTSSNGVKAETTRNKNQII 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 753284 756928 + CmaCh02G001630.1 Cma02g00163 287914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00163 761 MobiDBLite consensus disorder prediction 25 59 - -
Cma02g00163 761 ProSiteProfiles START domain profile. 241 473 IPR002913 GO:0008289
Cma02g00163 761 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Cma02g00163 761 Gene3D - 300 468 IPR023393 -
Cma02g00163 761 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 719 IPR042160 -
Cma02g00163 761 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Cma02g00163 761 Pfam Homeodomain 60 116 IPR001356 GO:0003677
Cma02g00163 761 Pfam START domain 251 470 IPR002913 GO:0008289
Cma02g00163 761 SMART HOX_1 58 121 IPR001356 GO:0003677
Cma02g00163 761 SMART START_1 250 470 IPR002913 GO:0008289
Cma02g00163 761 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 15 719 - -
Cma02g00163 761 Coils Coil 111 143 - -
Cma02g00163 761 SUPERFAMILY Homeodomain-like 48 117 IPR009057 -
Cma02g00163 761 CDD START_ArGLABRA2_like 245 469 - -
Cma02g00163 761 MobiDBLite consensus disorder prediction 1 68 - -
Cma02g00163 761 SUPERFAMILY Bet v1-like 489 714 - -
Cma02g00163 761 Gene3D - 46 134 - -
Cma02g00163 761 CDD homeodomain 60 118 IPR001356 GO:0003677
Cma02g00163 761 SUPERFAMILY Bet v1-like 241 472 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00163 Cma11g01832 CCT
Cma02g00163 Cma19g00929 CCT
Cma02g00163 Cma11g01832 ECH
Cma02g00163 Cma19g00929 ECH
Cma02g00163 Cma20g00628 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00163 Cma-Chr2:753284 Cma20g00628 Cma-Chr20:2926078 0 dispersed
Cma13g01095 Cma-Chr13:8246548 Cma02g00163 Cma-Chr2:753284 0 dispersed
Cma18g01234 Cma-Chr18:9694311 Cma02g00163 Cma-Chr2:753284 0 dispersed
Cma01g01144 Cma-Chr1:8366072 Cma02g00163 Cma-Chr2:753284 8.97E-121 wgd
Cma11g01832 Cma-Chr11:12238851 Cma02g00163 Cma-Chr2:753284 0 wgd
Cma19g00929 Cma-Chr19:8312158 Cma02g00163 Cma-Chr2:753284 0 wgd
Cma02g00163 Cma-Chr2:753284 Cma03g00527 Cma-Chr3:5028468 0 wgd
Cma02g00163 Cma-Chr2:753284 Cma07g00302 Cma-Chr7:1335086 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34413 PF01852 START 3.80E-58 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00163 K09338 - csv:101214763 1357.04