Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00166 ATGGTAAAATTCTGTAAGATGAGACAACCTCCACTTGGAACTTTGGGTTTATTCTGTAATGGAAGGGAAGTTTTGTGGAAAGACTTTGAAATAGGGACGGTGATGATTGTTCAGAGGGTGTTGATATCTTCAACAGGGATCATTTGTTCATCTTTTTGGAGCAATGTTGGTGTTTTGGGTTTGGAGGATTGTGATCAAAGCCAGAGTTGTGTTATTGGAAGGTCTGCACAGCCTGCAATTTTAGCTGCCATGGATGATGTTAATGCTGATAACAGTGTTCTTCCTGGAACAAAGCTGAACTTGATCTTACACGACACGAATTGCAGTGGATTTCTTGGAACAGTGGAAGCCTTGCGGCTGATGGAAGATGAAGTAGTCGCCGCCATTGGCCCACAATCCTCAAACATCGCTCACTTCATTTCCCATATCATCAACGAACTCCACATACCCCTTCTATCATTTGGAGCTACCGATCCTACTTTGACCACACCACACTATCCATACTTTGTTCGAACCACACAGAATGATTACTTCCAAATGAACGCAATAGCTGATCTCATAGACCACTTCGGATGGAGAGAGGTCATAGCCATCTTTGTAGATGATGACAATGCCAGAAACGGGATATCAGCATTGAACGATGCCTTAGCAAAGAAGCGTGTCAGGATCTCATACAAGGCCACCTTCTCTCCTGGCTCCCCCACTAGCGTGATAAATGACTTATTGGTATCAGTAAACCTCATGGAATCTCGTGTTTATATTGTTCATGTTAATCCCGACACTGGTTTATCAATATTCACCATTGCTAAGAAACTTGAAATGATGAACAGTGACTATGTCTGGATTGCAACAGATTGGCTTCCTTCTATTCTTGATTCATTTGAAACAAACAATCATGATGTAATGAATCATTTACAAGGAGTTGTTGCTCTTCGCCACCACACCCCTGATAGCAATCTCAAGAATAACTTCGCCTCCAAATGGAACACTACAAGCTTCAACTCTTATGCACTTTATGCATATGACTCTGTTTGGTTAGCAGCCAGAGCTCTCCACACATACTTTCAAGAAGGTGGCAATGTATCATTTTCTAATGACCCAAAGTTACATGAAAACAATGGAAGCAAGCTGCAGCTAACCTCACTTAGAGTGTTCAATGGCGGCGAACAACTTCTAGAGACAATCAAGAGAACCAAGTTCAAAGGTGTAAGTGGGTTGGTTCAATTTGGTGATGACAGAAACTTGATTCATCCAGCTTATGATATCATGAACATTGGAGGAACTGGCATGCGTAGAATTGGCTACTGGACAAATTATTCTGGTCTATCAACAATGACGCCAGAGAGTTCATATTCAAAGCCTCTTAATGCTACCCCAAATGGCCATCTCTACACTGTAATATGGCCTGGTGAAGCAACAGCCGTTCCTCGTGGATGGGTGTTCCCGCACAACGGGAAGCCATTGCAAATTGTAGTGCCTAACCGTGTGAATTACAAGGCTTTTGTGATTAAAGACAAGAGCCCACTAGGAGTTAAAGGGTATTGTATTGATGTGTTTGAAGCTGCTATAAACTTGTTGCCATATCCAGTTCCTCACGCATATATATTAAAGGGAGATGACAGTCTTGATTACAACAATCTTGTTTATGACGTTTCACAGAATAGATATGATGCAGCTGTTGGTGATATTATGATTGTAACGAATAGGACGAAGTATGTGGACTTCACACAACCATTTATGGAGTCTGGACTTGTGGTTGTTACTGTTGTTAAAGAGAAGAAGTCGAGTCCATGGGCTTTTCTCAGTCCCTTTACTGTTCAAATGTGGGCTGTCACTGCAATACTCTTTGTTTTTGTTGGAGCTGTTGTTTGGATTCTTGAGCATCGGAGTAATGAAGAGTTTAGCTTCTCGACAATGTTCTTTTCTCACAAGGAAAACACTGTAAGCACCCTTGGACGGTCGGTGCTTATAATATGGCTCTTTGTTGTGTTAATTATCAATTCAAGCTACACAGCTGGTTTGACATCTATCTTAACAGTGCAGCAGCTAACTTCAAAGGTTGAAGGGATTGATAGCTTAATCTCTAGCACCGATGCCGTAGGAATTCAAGAAGGCTCATTTTCATTGAATTATCTGATTCATGAGCTGAATATAGCAGCTTCTAGGATCGTTCAGCTGAAGAGCCAGGAGGAATATATGGATGCTCTTCGCCGTGGACCTGCAAATGGTGGGGTAGCCGCCATTGTAGACGAGCTTCCTTATGTCGAGCTTTTCCTGTCGGGCACTAATTGTGTCTTCAGGACTGTCGGGCAGGAGTTCACTAAAACCATTCTTCAACTCTCAGAGAAGGGCGATCTTCAAAAGATTCATGACAAATGGCTATCACGAACGGATTGTTCGAAGAATCTCAACCAAGTCGACGCAATCCAACTATCACTAACTAACTTCTGGGGGCTGTTTCTAATTTGTAGCATTGCTTGCATTGTTGCTCTTTTGATATTCTTCGGTAGAGTAGCATTCCAATATCGAAGAGCTACCCCGGAAGCCCAGCCTGAAGTCGAGGAGACCCAACCTGATAGGACGGGATGCTTCAGTCGTACTACTAGCTTCATCCAATTTCTAGATAAAAAAGAAGTCAAAAAGGCTAAAGGAAAATCCATTGATATCAACCCAGCTGGCCAGAGCTCTGAGGGCCACCCTGATGAACTCAAAAAGGCTAAAGGAAAATCCATTGATATCAACCCAGTTGGCCAGAGCTCTGAGGGCCACCCTGATTCACAGCCTCGTTAG 2790 42.69 MVKFCKMRQPPLGTLGLFCNGREVLWKDFEIGTVMIVQRVLISSTGIICSSFWSNVGVLGLEDCDQSQSCVIGRSAQPAILAAMDDVNADNSVLPGTKLNLILHDTNCSGFLGTVEALRLMEDEVVAAIGPQSSNIAHFISHIINELHIPLLSFGATDPTLTTPHYPYFVRTTQNDYFQMNAIADLIDHFGWREVIAIFVDDDNARNGISALNDALAKKRVRISYKATFSPGSPTSVINDLLVSVNLMESRVYIVHVNPDTGLSIFTIAKKLEMMNSDYVWIATDWLPSILDSFETNNHDVMNHLQGVVALRHHTPDSNLKNNFASKWNTTSFNSYALYAYDSVWLAARALHTYFQEGGNVSFSNDPKLHENNGSKLQLTSLRVFNGGEQLLETIKRTKFKGVSGLVQFGDDRNLIHPAYDIMNIGGTGMRRIGYWTNYSGLSTMTPESSYSKPLNATPNGHLYTVIWPGEATAVPRGWVFPHNGKPLQIVVPNRVNYKAFVIKDKSPLGVKGYCIDVFEAAINLLPYPVPHAYILKGDDSLDYNNLVYDVSQNRYDAAVGDIMIVTNRTKYVDFTQPFMESGLVVVTVVKEKKSSPWAFLSPFTVQMWAVTAILFVFVGAVVWILEHRSNEEFSFSTMFFSHKENTVSTLGRSVLIIWLFVVLIINSSYTAGLTSILTVQQLTSKVEGIDSLISSTDAVGIQEGSFSLNYLIHELNIAASRIVQLKSQEEYMDALRRGPANGGVAAIVDELPYVELFLSGTNCVFRTVGQEFTKTILQLSEKGDLQKIHDKWLSRTDCSKNLNQVDAIQLSLTNFWGLFLICSIACIVALLIFFGRVAFQYRRATPEAQPEVEETQPDRTGCFSRTTSFIQFLDKKEVKKAKGKSIDINPAGQSSEGHPDELKKAKGKSIDINPVGQSSEGHPDSQPR 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 764297 772183 - CmaCh02G001660.1 Cma02g00166 287917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00166 929 SUPERFAMILY Periplasmic binding protein-like I 55 480 IPR028082 -
Cma02g00166 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 340 352 - -
Cma02g00166 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 73 89 - -
Cma02g00166 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 133 161 - -
Cma02g00166 929 PIRSF IGluLR_plant 65 923 IPR017103 -
Cma02g00166 929 Gene3D - 597 721 - -
Cma02g00166 929 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 70 887 - -
Cma02g00166 929 Pfam Bacterial extracellular solute-binding proteins, family 3 497 750 IPR001638 -
Cma02g00166 929 Gene3D - 482 596 - -
Cma02g00166 929 Pfam Receptor family ligand binding region 77 426 IPR001828 -
Cma02g00166 929 CDD PBP1_GABAb_receptor_plant 72 443 IPR044440 -
Cma02g00166 929 MobiDBLite consensus disorder prediction 880 929 - -
Cma02g00166 929 Pfam Ligand-gated ion channel 751 827 IPR001320 GO:0015276|GO:0016020
Cma02g00166 929 Gene3D - 175 442 - -
Cma02g00166 929 Gene3D - 79 417 - -
Cma02g00166 929 SUPERFAMILY Periplasmic binding protein-like II 463 794 - -
Cma02g00166 929 SMART GluR_14 489 796 IPR001320 GO:0015276|GO:0016020
Cma02g00166 929 MobiDBLite consensus disorder prediction 913 929 - -
Cma02g00166 929 PANTHER GLUTAMATE RECEPTOR 3.4 70 887 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00166 Cma11g01829 CCT
Cma02g00166 Cma20g00624 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00166 Cma-Chr2:764297 Cma09g00038 Cma-Chr9:166741 0 dispersed
Cma02g00166 Cma-Chr2:764297 Cma02g00167 Cma-Chr2:772351 0 tandem
Cma11g01829 Cma-Chr11:12217237 Cma02g00166 Cma-Chr2:764297 0 wgd
Cma02g00166 Cma-Chr2:764297 Cma20g00624 Cma-Chr20:2914311 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00166 K05387 - csv:101215485 1330.08