Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00167 ATGGAGAGCTTATTAATTCTTACATTGATTGGTTCAATATGGGCATGTCTTGCTGGTTCTGCATGTTGCCAAAGGCCAGCAGTTGTGAACATTGGTGCAGTTTTCACTTTTGATTCAGTTATAGGAAGAGCCGCGAAGGTGGCAATGGAAGCTGCAGTTTCTGATGTTAATGCAGATCCTTCCATTCTCAATGGAACAAAGCTGAATTTGGTCATGGCAGACACTCATTGCAATGTTCTCTTGGGCTTTATTGGAGCTTTCCATGTTCTTGAGAAAGACGTGGTAGCCATCGTTGGGCCTCAATCTTCAGTTGTGGCTCATATGGTTCTACAGATTGCTAACAATCTCCAAGTGCCTCTTATATCATATGCTGCCACCGATACAACTTTATCTGCTCTCCAATTCCCCTTTTTTCTACGGACTACTCACAGTGACTCCGATCAAATGACTGCATTAGCAGAATTAATCGACTTTTATGAGTGGAAAGAGGTGATCATGATCTTTGTAGATGATGATTATGGTAGAAATGGAATATCCACTTTAACTGATGAACTTGACAAGATGTTTAAAATTTCTCATAAAATACCCTTACCTTCTCTGTTTCATCTCAGAGAAATCACGGACATACTCAATAAATCCAAGCTGCTTGGCCCTCGTGTCTATGTTGTTCATGTCAATCCTGATCCTAAATTAAGGATCTTCAAAATAGCTCATCAACTTAATATGATGACTAGTGATTATGTGTGGCTGGCAACAGATTGGCTTTCTACTACCTTAGATTCAATTCTTCCCATGAACAAATCCTCTCTAAACATCCTTCAAGGAGTGGTTGTTCTTCGTCAACATACTCCTGAATCCAGCCAAAAAACAACATTATGGTCTCGGTTAAGGAATTATTCATTGAATGTCTATGCTCTTAGTGCCTATGATACCATTCAAGTACTTGCACGCTCAATCGATAAGTTTCTGAATGAAGGTAGGAGCACTACCTTCTCTTTGAAGAATAAGTTTCATGATTTAAATACAACTAAAATGCCATTGGGGAAGCTCAAAGTATTTGATGATGGTGCTCTTCTTTTGAGCATATTGTTGCAGACAAAATTTACTGGTTTAAGTGGTCGGTTCGAGTTCAATTCGGATCGGAATATCTTCAGCAGAGGTTATGAGGTGATTAATATCGATCAGACCGGGTTGCATACAGTTGGTTATTGGTCAAATATCACAGGCTTTACAATCCAATCACCTGAAACTCTGAAGCAGAAACGAATTAGTTATACTCATCTAAACCAGACTCTTGGCAATGTTACCTGGCCTGGTGGGAAGACAGCAAAACCACGTGGATGGGTGATTGCAGACAATGAAAGACCGTTGATCATTGGAGTGCCACTTCGAGTAAGTTTCGTTGAATTTGTTACAGTAAGCAATGGAAGCAACAAGAACATTGAAGGATATTGTATTGATCTGTTCAATGAAGCAAGAAAGCTGGTCCCGTATGATGTTCCTTACAGATTTATACCTTTTGGTAATGGCTACTCCAATCCTTGTTATAACGACCTTGTGAACAACGTTCCCAACGGTATATTTGATGCAGCTGTTGGAGATATTGCAATTGTAGCCAACCGCACAAGGATTGTGGATTTTTCTCAGCCTTTTGCTTCTACTGGTCTTGTTATTGTGGCTCCAATCAAAAATTCAAAATCAAATGCTTGGGTTTTCCTTAAGCCATTTACAGTAGAGATGTGGTGTGTTACCTCGGCGTCGTTTTTTATGATCGGCGCGGTCATATGGCTTCTTGAGCATCGAGTAAACGATGATTTCCGTGGTCCACCAAAGAGGCAGCTTGTGACAGTAATACTGTTCAGCTTCTCAACCTTGTTTAAAACAAACCAGGAAGATACTGTAAGTCCACTTGGACGCATGGTAATGGTGGTGTGGCTGTTCTTATTGATGGTTATCACATCAAGCTACACAGCTAGTCTCACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATTAAAGGACTTGATGACTTGATTACCAGTGAACACCCAATTGGGTACCAGGTTGGATCGTTTGCATATAGCTATCTGACCGAGAGCCTTTACCTTCCACGATCGAGGCTTGTACCTCTAGGCTCTCCTGAAGAGTATGAATCAGCACTGTTGAAGGGGCCATTCAAAAAAGGAGGGGTGGCGGCTGTTGTTGATGAACTGCCATATATGGAGTTATTCTTGTCAGGGAGGAACGACTTTGGAATGATCGGTCAGCCATTCACCAAGAGTGGATGGGGATTTGCTTTTCAGAGAGGATCTCCACTTGCAGTAGACATTTCAACCGCAATTCTAAAGCTGTCCGAGAATGGAAAACTTCAGAAGATCCATGAGAAGTGGTTCTGCAAGAAGGGTTGTCCTGGAGAGAGGAGAAGGAAATCTGAGGCTAACCAACTTCACTTACTCAGCTTCTGGGGTCTATATCTGTTGTGCGGTGCCTTTTCACTCGCTGCTCTTCTCATATTTTTGCTCCGAATCGTTCGACAATTCGCTCGATACATAAGACAGCAGCAGAAGGAATCTTCCCATGCAGAGATGGTATCATCTAATTCAAACTCGAGCTGGATTCATGTCGTATACAAGTTTATCGACTTCGTCGATGAAAAGGAAGAAGCCATCAAGAGACTTTTTCGAAAGAATGATACTCAGAATCAGGCTAACTGA 2718 41.57 MESLLILTLIGSIWACLAGSACCQRPAVVNIGAVFTFDSVIGRAAKVAMEAAVSDVNADPSILNGTKLNLVMADTHCNVLLGFIGAFHVLEKDVVAIVGPQSSVVAHMVLQIANNLQVPLISYAATDTTLSALQFPFFLRTTHSDSDQMTALAELIDFYEWKEVIMIFVDDDYGRNGISTLTDELDKMFKISHKIPLPSLFHLREITDILNKSKLLGPRVYVVHVNPDPKLRIFKIAHQLNMMTSDYVWLATDWLSTTLDSILPMNKSSLNILQGVVVLRQHTPESSQKTTLWSRLRNYSLNVYALSAYDTIQVLARSIDKFLNEGRSTTFSLKNKFHDLNTTKMPLGKLKVFDDGALLLSILLQTKFTGLSGRFEFNSDRNIFSRGYEVINIDQTGLHTVGYWSNITGFTIQSPETLKQKRISYTHLNQTLGNVTWPGGKTAKPRGWVIADNERPLIIGVPLRVSFVEFVTVSNGSNKNIEGYCIDLFNEARKLVPYDVPYRFIPFGNGYSNPCYNDLVNNVPNGIFDAAVGDIAIVANRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLKPFTVEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLVTVILFSFSTLFKTNQEDTVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITSEHPIGYQVGSFAYSYLTESLYLPRSRLVPLGSPEEYESALLKGPFKKGGVAAVVDELPYMELFLSGRNDFGMIGQPFTKSGWGFAFQRGSPLAVDISTAILKLSENGKLQKIHEKWFCKKGCPGERRRKSEANQLHLLSFWGLYLLCGAFSLAALLIFLLRIVRQFARYIRQQQKESSHAEMVSSNSNSSWIHVVYKFIDFVDEKEEAIKRLFRKNDTQNQAN 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 772351 777769 - CmaCh02G001670.1 Cma02g00167 287918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00167 905 PIRSF IGluLR_plant 1 905 IPR017103 -
Cma02g00167 905 Gene3D - 144 409 - -
Cma02g00167 905 Gene3D - 47 385 - -
Cma02g00167 905 Gene3D - 569 701 - -
Cma02g00167 905 Gene3D - 747 806 - -
Cma02g00167 905 SUPERFAMILY Periplasmic binding protein-like II 432 801 - -
Cma02g00167 905 Pfam Ligand-gated ion channel 800 830 IPR001320 GO:0015276|GO:0016020
Cma02g00167 905 Pfam Bacterial extracellular solute-binding proteins, family 3 477 799 IPR001638 -
Cma02g00167 905 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 902 - -
Cma02g00167 905 Gene3D - 463 568 - -
Cma02g00167 905 PANTHER GLUTAMATE RECEPTOR 3.7 13 902 - -
Cma02g00167 905 CDD GluR_Plant 455 799 - -
Cma02g00167 905 SMART GluR_14 458 801 IPR001320 GO:0015276|GO:0016020
Cma02g00167 905 Coils Coil 884 904 - -
Cma02g00167 905 SUPERFAMILY Periplasmic binding protein-like I 22 448 IPR028082 -
Cma02g00167 905 CDD PBP1_GABAb_receptor_plant 30 411 IPR044440 -
Cma02g00167 905 Pfam Receptor family ligand binding region 46 394 IPR001828 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00167 Cma20g00622 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00167 Cma-Chr2:772351 Cma11g01829 Cma-Chr11:12217237 0 dispersed
Cma02g00166 Cma-Chr2:764297 Cma02g00167 Cma-Chr2:772351 0 tandem
Cma02g00167 Cma-Chr2:772351 Cma20g00622 Cma-Chr20:2895161 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00167 K05387 - csv:101215715 1588.55