Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00175 ATGGACTGGACTAGAGGCCACATCATCGGCCAAGGCTCCTCTGCCACCGTCTTCCTGGCCACCGCCTCTCCCGGCGGCGATGTCTTCGCCGTCAAATCTGCCGAGGTTACTCACTCGCAATCTCTACAGAGAGAGCAATGCTTCCTTTCTTCTCTAGCCTCTCCGTATGTGGTTTTTTGTAGAGGCTGTGATGTCCGTACCGAACAGAGTGGCATCGTGATGTTCAATTTGTTCATGGAGTATTTACCCAACGGCTCACTCGCCGACGCGATTGGCCACCGTGGAGGGCGGCTGGACGAGGCGGTGATCGGAAATTACACGCGGGACTTACTACAGGGATTACAGTACATTCATTCAAAAGGCTTAGTACATTGCGACATTAAAGCCCGAAACGTTTTGATCGGCCGAGACGGTAAGGCGAAACTAGCGGATTTCGGATGCGCCAAGTGGGCGAGCCAGACGGAAGTAATCGGCGGAACGCCCCTGTTTATGGCGCCTGAAGTGGCTCGTGGTGAGCACCAAGGACTCGCCTCCGACATTTGGTCAATTGGGTGTACAATCATTGAAATGGCCACCGGCGGCGGCTCGCCATGGATGAACACAACCGACAACGACCCAATTTCCGCCCTGTATCGAATTGGGTATTCCGGCAAGTCGCCGGAAATTCCATCTTTTTTATCTCACAAAGCGAAGGATTTTGTAGAGAAGTGCTTAAGGAGAAACCCAAAAGAGAGATGGACGGCGAATCAGCTTCTAAATCACCCATTTTTAAGGGAACTGAAATCCATTTCCACCGGAAAGAAAATCCGGGAAGTTGATTCAGATTCTCCGACGAGTGTTGTAGAACAGGGGATTTGGAGATCAATTGAAGAATCCGGATTTTTCCGACCCAGTTGGTCGCCGACAGAGCAGATCCGACGGCTGGCAATGGATTCAGGGGAGGCGAGATGGACGGAGGATGAGAATTGGACGACGATCCGAAGCGAAGAAGTGGGTGAGGAAGAGAGAGGCGGTGGCGGCAAAGGGTGGTTGGCAATGGAATTCATAGATAAGAAGAATGTTAGGTGTAGAATTACTAGAAATGATTTGGCGGACAATAGTTATCCAACTAACCCGAGTCCCTCCAATTAA 1131 51.11 MDWTRGHIIGQGSSATVFLATASPGGDVFAVKSAEVTHSQSLQREQCFLSSLASPYVVFCRGCDVRTEQSGIVMFNLFMEYLPNGSLADAIGHRGGRLDEAVIGNYTRDLLQGLQYIHSKGLVHCDIKARNVLIGRDGKAKLADFGCAKWASQTEVIGGTPLFMAPEVARGEHQGLASDIWSIGCTIIEMATGGGSPWMNTTDNDPISALYRIGYSGKSPEIPSFLSHKAKDFVEKCLRRNPKERWTANQLLNHPFLRELKSISTGKKIREVDSDSPTSVVEQGIWRSIEESGFFRPSWSPTEQIRRLAMDSGEARWTEDENWTTIRSEEVGEEERGGGGKGWLAMEFIDKKNVRCRITRNDLADNSYPTNPSPSN 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 804772 807384 - CmaCh02G001750.1 Cma02g00175 287926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00175 376 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cma02g00175 376 PANTHER MAP KINASE KINASE KINASE 1 342 - -
Cma02g00175 376 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 342 - -
Cma02g00175 376 PRINTS Tyrosine kinase catalytic domain signature 116 134 IPR001245 GO:0004672|GO:0006468
Cma02g00175 376 PRINTS Tyrosine kinase catalytic domain signature 79 92 IPR001245 GO:0004672|GO:0006468
Cma02g00175 376 PRINTS Tyrosine kinase catalytic domain signature 178 200 IPR001245 GO:0004672|GO:0006468
Cma02g00175 376 SUPERFAMILY Protein kinase-like (PK-like) 2 271 IPR011009 -
Cma02g00175 376 SMART serkin_6 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00175 376 ProSiteProfiles Protein kinase domain profile. 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00175 376 Pfam Protein kinase domain 5 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00175 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Cma02g00175 376 CDD STKc_MAPKKK 2 257 - -
Cma02g00175 376 Gene3D Transferase(Phosphotransferase) domain 1 2 284 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00175 Cma19g00913 CCT
Cma02g00175 Cma11g01815 CCT
Cma02g00175 Cma11g01815 ECH
Cma02g00175 Cma19g00913 ECH
Cma02g00175 Cma20g00605 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00701 Cma-Chr7:3081457 Cma02g00175 Cma-Chr2:804772 4.71E-69 transposed
Cma20g00987 Cma-Chr20:5356228 Cma02g00175 Cma-Chr2:804772 4.48E-65 transposed
Cma01g01118 Cma-Chr1:8194586 Cma02g00175 Cma-Chr2:804772 2.46E-94 wgd
Cma11g01815 Cma-Chr11:12131750 Cma02g00175 Cma-Chr2:804772 2.15E-127 wgd
Cma19g00913 Cma-Chr19:8240449 Cma02g00175 Cma-Chr2:804772 5.58E-120 wgd
Cma02g00175 Cma-Chr2:804772 Cma20g00605 Cma-Chr20:2831848 0 wgd
Cma02g00175 Cma-Chr2:804772 Cma03g00547 Cma-Chr3:5098993 1.64E-86 wgd
Cma02g00175 Cma-Chr2:804772 Cma07g00322 Cma-Chr7:1405439 5.54E-102 wgd
Cma02g00175 Cma-Chr2:804772 Cma09g00962 Cma-Chr9:4863606 2.98E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68316 PF00069 Pkinase 9.70E-54 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00175 K20716 - csv:101208274 486.493