Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00196 ATGCCGAGGGGTTTGAAGAGTAATTGCCAGTCTACTTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAACCGTGTGAATGATCTTCAAGGGATATTCACTAATCTTCAATCTGCAAGGAAGGAGAGCCGTACTACCGATGTTGCTGTCTTGGAGGAGCAAGTGCATCAGATGCTCAGGGAGTGGAATGCCGAGCTTAATGAACCATCCCCTGCCTCTTCATTTGTTGAGGGCAGTCTTGGATCGTTCTCACAAGAATTAGCTCGTCTTCTTGAGCATTTCGATGAGGAAGATGATGCAACTAGCACATTGGCTGAACCAAAGGTCGAGCCTGATCAACATTGCGTTCTTGCTTGCAATCCGTCTGATTTTCAGCAGCAGCATAGTGTTCTTGGATTTGAAGAGTGCAAAGTCAATAGTGAAGATTTCAAATTAGATCAGAACTTTGTGCAGAACTTAGTGGTCGGTATGGATGATATGTCTACTATGGATTGTCGTTTATTGGATTCGCACCAAGAGTTCGACTATGGGGTGCTTATCGGGGCGTATGATGCGGGAGACTTTAGTCAGGACACAAAGCCTAGCATTCCCCCATACATCTCGCCCCCACCATCTGCTTTTATGGGGCCAATGTGTGCACTCTGGGATTGTTTCAGACCTGTTCAAGGATCTAAATGGTGCCAGGACTATTGCAGTAGCTGTCATTCCATGCTTGCAATAAATGAAGGCCTTCCAGGAATGGCTCCAATATTGCGCCCTGGGGGCACTGGCTTAACAGATGGTCCACTATTTGCTGCTCTTCTTGCAAAGACACAGGCCAAAGAGGTGGGAATACCTATATGTGATGGTGCTGCAACAAGAAAATCTCCATGGAATGCTCCTGAGCTTTTTGATATTTCATTTCTTGAGGGTGAGACAATCAGGGAATGGCTCTATTTCGACAAACCTAGACGGGCCTTTGAGAGTGGTACTCGAAAGCAAAGGTCATTGCCAGATTATAGCGGCCGTGGTTGGCATGAATCAAGGAAGAAGGTGATGGAGGAGTTCGGTGGTCAGAAGAAGTCCTATTACATGGATCCACAGCCATCAAGCTCACTCGAATGGCATTTGTACGAATATGATATAAGCAATTATGATTCATTTGCATTATATAGGCTAGAACTCAAGCAAGCTGGTGCAAAAAAGAGCCCAAAGGGAAAACTACCAGCTGATCCTCTGGCTGATCTGCAGAAGAAGATGGGCAGGCTTACTGCAAAGGGGCCTGTGGAGCTTGGACAATCAGTCAAATAA 1287 45.77 MPRGLKSNCQSTSHQLLKEKAKNRVNDLQGIFTNLQSARKESRTTDVAVLEEQVHQMLREWNAELNEPSPASSFVEGSLGSFSQELARLLEHFDEEDDATSTLAEPKVEPDQHCVLACNPSDFQQQHSVLGFEECKVNSEDFKLDQNFVQNLVVGMDDMSTMDCRLLDSHQEFDYGVLIGAYDAGDFSQDTKPSIPPYISPPPSAFMGPMCALWDCFRPVQGSKWCQDYCSSCHSMLAINEGLPGMAPILRPGGTGLTDGPLFAALLAKTQAKEVGIPICDGAATRKSPWNAPELFDISFLEGETIREWLYFDKPRRAFESGTRKQRSLPDYSGRGWHESRKKVMEEFGGQKKSYYMDPQPSSSLEWHLYEYDISNYDSFALYRLELKQAGAKKSPKGKLPADPLADLQKKMGRLTAKGPVELGQSVK 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 876295 878935 - CmaCh02G001960.1 Cma02g00196 287947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00196 428 PANTHER TRANSCRIPTION FACTOR VOZ2 1 428 - -
Cma02g00196 428 PANTHER TRANSCRIPTION FACTOR VOZ1 1 428 IPR039277 GO:0006355|GO:0048578
Cma02g00196 428 Coils Coil 18 38 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00196 Cma20g00581 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00196 Cma-Chr2:876295 Cma07g00212 Cma-Chr7:978085 2.79E-170 dispersed
Cma02g00196 Cma-Chr2:876295 Cma20g00581 Cma-Chr20:2770379 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34416 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00196 - - cmax:111469812 875.159