Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00196 ATGCCGAGGGGTTTGAAGAGTAATTGCCAGTCTACTTCTCATCAGCTTTTGAAGGAAAAAGCAAAGAACCGTGTGAATGATCTTCAAGGGATATTCACTAATCTTCAATCTGCAAGGAAGGAGAGCCGTACTACCGATGTTGCTGTCTTGGAGGAGCAAGTGCATCAGATGCTCAGGGAGTGGAATGCCGAGCTTAATGAACCATCCCCTGCCTCTTCATTTGTTGAGGGCAGTCTTGGATCGTTCTCACAAGAATTAGCTCGTCTTCTTGAGCATTTCGATGAGGAAGATGATGCAACTAGCACATTGGCTGAACCAAAGGTCGAGCCTGATCAACATTGCGTTCTTGCTTGCAATCCGTCTGATTTTCAGCAGCAGCATAGTGTTCTTGGATTTGAAGAGTGCAAAGTCAATAGTGAAGATTTCAAATTAGATCAGAACTTTGTGCAGAACTTAGTGGTCGGTATGGATGATATGTCTACTATGGATTGTCGTTTATTGGATTCGCACCAAGAGTTCGACTATGGGGTGCTTATCGGGGCGTATGATGCGGGAGACTTTAGTCAGGACACAAAGCCTAGCATTCCCCCATACATCTCGCCCCCACCATCTGCTTTTATGGGGCCAATGTGTGCACTCTGGGATTGTTTCAGACCTGTTCAAGGATCTAAATGGTGCCAGGACTATTGCAGTAGCTGTCATTCCATGCTTGCAATAAATGAAGGCCTTCCAGGAATGGCTCCAATATTGCGCCCTGGGGGCACTGGCTTAACAGATGGTCCACTATTTGCTGCTCTTCTTGCAAAGACACAGGCCAAAGAGGTGGGAATACCTATATGTGATGGTGCTGCAACAAGAAAATCTCCATGGAATGCTCCTGAGCTTTTTGATATTTCATTTCTTGAGGGTGAGACAATCAGGGAATGGCTCTATTTCGACAAACCTAGACGGGCCTTTGAGAGTGGTACTCGAAAGCAAAGGTCATTGCCAGATTATAGCGGCCGTGGTTGGCATGAATCAAGGAAGAAGGTGATGGAGGAGTTCGGTGGTCAGAAGAAGTCCTATTACATGGATCCACAGCCATCAAGCTCACTCGAATGGCATTTGTACGAATATGATATAAGCAATTATGATTCATTTGCATTATATAGGCTAGAACTCAAGCAAGCTGGTGCAAAAAAGAGCCCAAAGGGAAAACTACCAGCTGATCCTCTGGCTGATCTGCAGAAGAAGATGGGCAGGCTTACTGCAAAGGGGCCTGTGGAGCTTGGACAATCAGTCAAATAA 1287 45.77 MPRGLKSNCQSTSHQLLKEKAKNRVNDLQGIFTNLQSARKESRTTDVAVLEEQVHQMLREWNAELNEPSPASSFVEGSLGSFSQELARLLEHFDEEDDATSTLAEPKVEPDQHCVLACNPSDFQQQHSVLGFEECKVNSEDFKLDQNFVQNLVVGMDDMSTMDCRLLDSHQEFDYGVLIGAYDAGDFSQDTKPSIPPYISPPPSAFMGPMCALWDCFRPVQGSKWCQDYCSSCHSMLAINEGLPGMAPILRPGGTGLTDGPLFAALLAKTQAKEVGIPICDGAATRKSPWNAPELFDISFLEGETIREWLYFDKPRRAFESGTRKQRSLPDYSGRGWHESRKKVMEEFGGQKKSYYMDPQPSSSLEWHLYEYDISNYDSFALYRLELKQAGAKKSPKGKLPADPLADLQKKMGRLTAKGPVELGQSVK 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 876295 878935 - CmaCh02G001960.1 Cma02g00196 287947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00196 428 PANTHER TRANSCRIPTION FACTOR VOZ2 1 428 - -
Cma02g00196 428 PANTHER TRANSCRIPTION FACTOR VOZ1 1 428 IPR039277 GO:0006355|GO:0048578
Cma02g00196 428 Coils Coil 18 38 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00196 - - - cmax:111469812 875.159
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00196 Cma20g00581 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00196 Cma-Chr2:876295 Cma07g00212 Cma-Chr7:978085 2.79E-170 dispersed
Cma02g00196 Cma-Chr2:876295 Cma20g00581 Cma-Chr20:2770379 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g218 . . Bda06g00389 . . . . . . . Cma02g00196 Cma20g00581 . Car20g00557 . . . . . . . . . . . . . . . . . . Cone10ag1260 . . . . Chy11g00658 . . . . . . . . Bma12g00825 . Cmo02g00199 Cmo20g00652 . . . . Cpe16g00412 Cpe05g01419 Bhi10g01369 Tan05g0925 . . Hepe08g0429 . . . . . . . . . . . . Cme11g00861
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma07g00212 CST 269 745 VOZ-9 Transcription Factor Family AT1G28520 70.6 2.5e-197 685.6
Cma03g01301 . 26 382 VOZ-9 Transcription Factor Family AT1G28520 67.3 6.5e-137 485.0
Cma20g00581 CST 6 450 VOZ-9 Transcription Factor Family AT1G28520 57.4 7.2e-136 481.5
Cma02g00196 CST 6 422 VOZ-9 Transcription Factor Family AT1G28520 56.4 9.1e-131 464.5
Cma03g01300 . 91 214 VOZ-9 Transcription Factor Family AT1G28520 78.2 4.6e-50 196.4
Cma02g00196 CST 11 415 VOZ-9 Transcription Factor Family AT2G42400 50.1 1.2e-105 380.9
Cma07g00212 CST 291 686 VOZ-9 Transcription Factor Family AT2G42400 50.2 2.3e-104 376.7
Cma03g01301 . 105 322 VOZ-9 Transcription Factor Family AT2G42400 70.2 5.5e-90 328.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005492 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 5 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34416 None None None None Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00196 Cma_Chr02 FPKM 24.601954 29.509563 19.201416 20.748386 20.551567 20.381001 25.095625 12.986657 13.756827 14.621913