Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00198 ATGCAACAAAGCTTGAGAATGATGGAGAAAATGGTAAACGATGAATTCCCAAACTCTTTCCTCCAAATCCCGCTCGCCAGATCCAACCCTTTTTCGCCCAAGAAGAAGCGCAACCACCCCGGAACCCCCGATCCCGACGCGGAAGTCATAGCGCTGTCGCCCAAGACACTGATGGCCATGAACAGATTCGTGTGTGAAATATGTGGGAAAGGGTTTCAAAGAGACCAAAACTTGCAGCTCCATAGACGAGGACATAACCTTCCATGGAAGCTGAAGCAAAGAAGCAACAAAGAGGTGAGGAAGAGAGTGTATGTGTGCCCTGAAACCAGCTGCGTGCACCACCATCCATCCAGAGCGCTGGGGGATCTCACCGGGATTAAGAAGCACTTTTGTAGAAAGCATGGCGAGAAGAAGTGGAAGTGTGAGAAGTGCTCTAAGAGATATGCTGTCCAGTCTGATTGCAAAGCGCACTCCAAAACTTGTGGCACTAAAGAGTACAAATGTGGCTGTGGTACTCTATTTTCCAGGAGAGACAGCTTCATTACTCACAGGGCTTTCTGCGATGCATTAGCTGAAGAAACAGCAAGAGTGAACGCCGCCACTACAATAACCGCCGCCATGGCTTCCGCCGCCAATTTCAATTGCAATTTCATGGCTGGAGTCACAGAACCACCATTCATGCCTTCAATTTTCAGCTGCAATGGCCTCTCCTCAAGAACCAACACCAACAACAATCTACACCCAATTCCCCAAATTAATTCAGGGCTAATGTACTGTGACCCATTATTAAATTCTTGCCACGCCCCGCCACCAGCTGATTATAATCTGAATTGGGTATTTGGAACAAAGGGTCATGATTCAGTTCAAAATCCACCGTTGATGAGTGGCGGTGGCGGTGTTTCTTCACTGTACAGCCACCAATTACAGCAAGTGAATCAAACCCACATGGCTAACATGTCAGCCACTGCTTTGCTGCAGAAAGCAGCTGAAATTGGGCCAAATTCCAGCTCGGATCCACCATTTTTCCAAGAGGGTTTTGTGTTCAAATGCAGCGGCGGTACAGTTCAAAATGGGAGTGAATTTTCAAATTCTGTTACTCAAATCCCAATTATGGCGAATGAGAATGAGATGTACACTGCAAAACGGCGTCGTACTCAGAGTGAATTCATGGGAAGTGGAAGTGGGTTAACAGGAGGAGGGCAGACAAGGGATTTTCTTGGAGTTGGTGCCAACACTATTTGCCACACTTCATCCATTAATGGATGGATTTAG 1272 47.09 MQQSLRMMEKMVNDEFPNSFLQIPLARSNPFSPKKKRNHPGTPDPDAEVIALSPKTLMAMNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVRKRVYVCPETSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDCKAHSKTCGTKEYKCGCGTLFSRRDSFITHRAFCDALAEETARVNAATTITAAMASAANFNCNFMAGVTEPPFMPSIFSCNGLSSRTNTNNNLHPIPQINSGLMYCDPLLNSCHAPPPADYNLNWVFGTKGHDSVQNPPLMSGGGGVSSLYSHQLQQVNQTHMANMSATALLQKAAEIGPNSSSDPPFFQEGFVFKCSGGTVQNGSEFSNSVTQIPIMANENEMYTAKRRRTQSEFMGSGSGLTGGGQTRDFLGVGANTICHTSSINGWI 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 891185 893321 + CmaCh02G001980.1 Cma02g00198 287949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00198 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Cma02g00198 423 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Cma02g00198 423 Gene3D Classic Zinc Finger 59 86 - -
Cma02g00198 423 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Cma02g00198 423 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 417 - -
Cma02g00198 423 MobiDBLite consensus disorder prediction 27 47 - -
Cma02g00198 423 PANTHER ZINC FINGER PROTEIN MAGPIE 30 417 - -
Cma02g00198 423 SMART c2h2final6 139 159 IPR013087 -
Cma02g00198 423 SMART c2h2final6 63 85 IPR013087 -
Cma02g00198 423 Gene3D Classic Zinc Finger 97 187 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00198 Cma11g01799 CCT
Cma02g00198 Cma20g00577 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00198 Cma-Chr2:891185 Cma06g00370 Cma-Chr6:1719002 6.34E-108 dispersed
Cma11g01799 Cma-Chr11:12037177 Cma02g00198 Cma-Chr2:891185 3.84E-122 wgd
Cma02g00198 Cma-Chr2:891185 Cma20g00577 Cma-Chr20:2758301 1.33E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34417 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00198 K25870 - csv:101211656 478.018