Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g00216 | ATGCCAGCTGATAATTCAATTCCATTTGACCGAGATGCCGAGCCTTTTGTTGAGGTCGATCCAACTGGAAGGTTTGGACGATACGATGTTCTTCTTGGGTCTGGAGCAGTGAAGAAAGTTTATCGGGCATTTGATCAGGAGGAAGGTATAGAGGTTGCTTGGAATCAGGTTCGATTGAGGAAATTCAGTGGGGATCCAGTGTTCATCAACCGCTTGAGATCGGAGGTTCAGCTGCTGAGCACGTTGAGTAACGATTATATCATAGTTTGCTACAGTGTTTGGAATGATGATGAGCACAATACGTTGAATTTCATTACCGAGGTGTGTACATCAGGAAATCTGAGGGATTATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAGAAGTGGTCAAAGCAGGTACTTGAGGGATTGGATTATCTTCATAATCATGAGCCTTGCATTATTCACCGAGATCTCAACTGCAGTAACATATTTGTCAATGGGAATATTGGTCAGGTGAAAATAGGTGATCTAGGTTTTGCAGCTATAGTTGGCAAGAGTCATGCTGCGCACTCAATCATAGGCACACCGGAGTATATGGCACCAGAACTATACGAGGAAGATTACACAGAGATGGTGGATATATACTCTTTTGCGATGTGTTTGCTTGAGATGGTCACGATGGAGATACCATACAGTGAATGTGATAGTATTGCCAAGATATACAAGAAGGTGACGACTGGAATAAAACCCCAAGCATTAAACAAAGTGACAAATGATGAAGTTAGGGCTTTCATTGAGAAGTGCATTGCACAACCAAGGGCAAGGCCTACCACTTCTGAACTTCTCAAGGACCCCTTCTTCGACGAAGTCAGGGATGAAGATTCCGAACAGAGTTATTAG | 891 | 42.99 | MPADNSIPFDRDAEPFVEVDPTGRFGRYDVLLGSGAVKKVYRAFDQEEGIEVAWNQVRLRKFSGDPVFINRLRSEVQLLSTLSNDYIIVCYSVWNDDEHNTLNFITEVCTSGNLRDYRKKHRHVSIKALKKWSKQVLEGLDYLHNHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGFAAIVGKSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFAMCLLEMVTMEIPYSECDSIAKIYKKVTTGIKPQALNKVTNDEVRAFIEKCIAQPRARPTTSELLKDPFFDEVRDEDSEQSY | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 961119 | 964126 | - | CmaCh02G002160.1 | Cma02g00216 | 287967 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g00216 | 296 | ProSiteProfiles | Protein kinase domain profile. | 26 | 284 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma02g00216 | 296 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK11-RELATED | 1 | 288 | - | - | |
Cma02g00216 | 296 | Pfam | Protein kinase domain | 31 | 284 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma02g00216 | 296 | SUPERFAMILY | Protein kinase-like (PK-like) | 19 | 285 | IPR011009 | - | |
Cma02g00216 | 296 | Gene3D | Phosphorylase Kinase; domain 1 | 11 | 107 | - | - | |
Cma02g00216 | 296 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 1 | 288 | - | - | |
Cma02g00216 | 296 | Gene3D | Transferase(Phosphotransferase) domain 1 | 109 | 290 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g00216 | Cma19g00871 | CCT | |
Cma02g00216 | Cma19g00871 | ECH | |
Cma02g00216 | Cma20g00669 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00216 | Cma-Chr2:961119 | Cma06g00855 | Cma-Chr6:4765519 | 2.12E-163 | dispersed | |
Cma02g00216 | Cma-Chr2:961119 | Cma20g00669 | Cma-Chr20:3066602 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68317 | PF00069 | Pkinase | 1.10E-50 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g00216 | K08867 | - | csv:101222153 | 577.015 |