Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00217 ATGCAAGCTTCTCAGCTTTATAGAGGTCAACATATGTCGAAAAGACTGTGTTATCAGCCACTTCAAGGAGTGGATGCCTACTGTGTCTCCCAATTTCAAACTTTAGGTCGCCAATTATATACCAATGCTGGCAACGAAAGAGCTCAGTTCAATCTTCAAGACATCAGTGATCGGTACTGCACTTTGGAGTCGTCCTCAGGAAGCCACGGCTATGCAAATCACAACTCGACGTCGACGACCATCACTTTCTCATCCAATGGGAGTCCTTCTGATCAGCATAATTCCCCTGACAATACGTATGGCTCACCAGTAAGCGGATCCTGCATAACAGATGATATTAGTGATTTTAGGCACAAACTGCTGGAATTGGAAACTGTGATGCTTGGCCCTGATTCTGATATTGTTGATAGTTTTGATAGTTTCTACCAGGAAGGAACTGAAAATTCAGAAGTGGGAAGTTGGGGACAAGTGATGGATGCAATCACTAAAGGGAACTTAAAAAAGATCCTAATAGCTTGTGCTAAGGCCGTGTCCGATAATGATGCCTTAATGGCACAATGGCTTATGGATGAACTGCGCAAGATGGTGTCGGTTCGGGGTGAACCGATGCAGAGATTGGGAGCTTATATGTTGGAGGGGCTGGTTGCACGGTCAACCTTCTCAGGCAGTAGCATCTATAAATCTTTGAGATGCAAGGAACCAGCAAGCATGGAGCTCCTCTCTTATATGCATGTTTTGTACGATGTTTGCCCGTATTTCAAATTTGGATACATGTCTGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATAGAGTACACATCATTGATTTCCAAATCTCTCAGGGTACTCAATGGATCACTTTGATTCAAGCTTTTGCAGGCAGGCCTGGTGGACCGCCTCACATTCGTATAACCGGCATAGATGATCCTGCATCAGCTCACGCTCGGGGAGGCGGCCTAGATATCGTAGGGATGAGGCTTTCTAAGTTAGCAAAGTTATTTAATGTCCCATTTGAGTTTCACTCGGCTGCCATCTCTGGCTGCGACGTTCAGCAGAAAGACTTGGGAATTCGACGAGGGGAGGCTTTAGCAGTGAACTTTGCATTCATGCTACACCATATGCCAGATGAGAGCGTAAGCACCGAAAACCATCGAGATCGGCTATTGAGGCTGGTTAAGGGTCTGTCTCCAAAGGTAGTGACGCTTGTTGAACAAGAATCCAACACGAACACCGCTGCATTCTTTCCCCGGTTCATCGAAACGCTGGATTACTACAACGCCATGTTTGAATCAATCGACGTTACTCTTCCAAGGCAGCACAAGGAGCGAATCAACATCGAGCAGCATTGTCTAGCCAGGGAAGTTGTCAACATACTAGCATGTGAAGGGGCAGAGAGAGTAGAACGACACGAGCTACTCGGAAAGTGGCGACTGCGATTCTCAATGGCAGGATTCACTCCCTACCCATTAAGCTCTTTGGTGAATGCTACCATAAAAACGTTATTAGATAACTATTCTAACAGGTATAGGCTTGAAGAGAAAGAAGGGGCTCTATATCTAGGCTGGATGGATAGGGATTTGGTTGCTTCTTGTGCATGGAAGTGA 1611 45.75 MQASQLYRGQHMSKRLCYQPLQGVDAYCVSQFQTLGRQLYTNAGNERAQFNLQDISDRYCTLESSSGSHGYANHNSTSTTITFSSNGSPSDQHNSPDNTYGSPVSGSCITDDISDFRHKLLELETVMLGPDSDIVDSFDSFYQEGTENSEVGSWGQVMDAITKGNLKKILIACAKAVSDNDALMAQWLMDELRKMVSVRGEPMQRLGAYMLEGLVARSTFSGSSIYKSLRCKEPASMELLSYMHVLYDVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAHARGGGLDIVGMRLSKLAKLFNVPFEFHSAAISGCDVQQKDLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQESNTNTAAFFPRFIETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFSMAGFTPYPLSSLVNATIKTLLDNYSNRYRLEEKEGALYLGWMDRDLVASCAWK 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 966346 967956 - CmaCh02G002170.1 Cma02g00217 287968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00217 536 MobiDBLite consensus disorder prediction 80 104 - -
Cma02g00217 536 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 536 IPR005202 -
Cma02g00217 536 ProSiteProfiles GRAS family profile. 157 536 IPR005202 -
Cma02g00217 536 Pfam GRAS domain family 166 536 IPR005202 -
Cma02g00217 536 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 18 536 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00217 Cma20g00670 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00217 Cma-Chr2:966346 Cma16g00944 Cma-Chr16:7274694 0 dispersed
Cma15g00959 Cma-Chr15:5172627 Cma02g00217 Cma-Chr2:966346 1.21E-73 dispersed
Cma02g00217 Cma-Chr2:966346 Cma20g00670 Cma-Chr20:3070596 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34421 PF03514 GRAS 1.60E-134 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00217 - - csv:101221914 974.926