Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00221 ATGGTTAACTATGAAACGGATTCTTCATGGGTTTGTGAAGAATCGATGTTGAATTTGTGTTCGGTGGAGGAGTTTTATGTGGTGGGGTTGGTTTGGCGGAGCTGGGGTTTTCTCAAGCTCTTAAGGTGTTTACTTAGGATGTCTTTGAACTGCAAGTTTTCTATCTTTAATGGAAAGTTTCCAGCTGGGTTTAAGCTGAAGAAGGCTAAGGAACATCTATGTTTGTTAAATTCCACTGGAAAATGGAAGAAGAAGCTGTTCTGTCTTTGGATTTTTACTGTAGTTTTAGCTTTGGGCAGCTGGTTTTCCTTGCGTTCGTGTAATGTAAATAGTGGAACAAAACAGCAAATCTCGAACTTGTTTGATGAAGAAACTCAAACTTTGATGCGGCATTTCAATGTAAGCAAGAATCAGATTCAAGCTTTGACTGCCTTGTTATCTGAATCAGATCGGATGACATCCATGGGGTGCATCAATGATTTTGGATCTGACAAATCACAGTTGGATGGAATTGCCTGTACCCTGAGGTCACTGTACTGGGAGCAAGATTTGCACAAGCAGCATGTATGGGTTGAAGGAAGTGCAGATTCCAATGTTGGGCAGTGCCCAATTCGAACTGAGAAGGTCCCTGAAAATTCTGAACAATTATTCTCTGAGGACATAACTGTTCCATATGCTACAGACTTATCTGTCTCTTTACTTTCTTCAGGAAATCAGCTCTGTGGAAAGATAATTGAACAAGCAGGAGTTCTAAGATACTTTATAAGAAAGCACTGGAAGAGTTTTTATAGTTTGTTGATTGGATGTTTTTCAGTCTTTCTTGGAGTGATATCATTCCAGAAAACATCTGGTTTCCATCTAAAAATGTGGAACAAAAAACATCCAAAGCCAAATCAGCCATTGGTTCATCCACAATGGGTCTTACAACGGAGAAAAAAACATCAACAAGTCAAAGATTCTCCTCAAGGAGCAGGAAAATGGCGGAAGGTGCTCCTAAGAATATTTATTGTATTCGGAATAATCGGGTCCATATGGCTATTTTGGTACCTGAACAAGACAGCCATTTTGAGAAGAGAAGAAACACTTGCAAACATGTGTGATGAGCGAGCTCGGATGTTGCAGGACCAGTTTAATGTTAGCATGAACCATGTTCATGCATTGGCCAAAACATTTGGTGAGTATACAGAAAGAACATCCTTTGAAAGACCACTAACTAGTGGTGTAGCTTATGCTTTGAAAGTTAATCACTCAGAAAGAGAACAATTTGAGAGGATGCATGGATGGACAATAAAGAAAATGGAGACAGAGGACCAAACTCTTGTTCAAGATTGTAACCCAGAAAATTTGGAGCCTGCACCAATTCAAGATGAATATGCACCTGTCATATTTTCTCAAGAAACGGTCTCTCATATAGTTTCTATTGACATGATGTCTGGAAAAGAAGATCGTGAGAACATATTACGAGCTAGAGCTTCTGGAAAGGGAGTGCTTACATCTCCTTTTAAGCTTTTGAAATCTAATCACCTTGGAGTCGTCCTCACGTTTGCCGTCTATGACACTGACCTCCCACCAGATGCTACTCCTGAGCAACGTATCGAAGCTACTGTTGGTTATCTAGGTGCATCTTATGATATCCCCTCACTGGTGGAAAAGCTTCTGCATCAGCTTGCTAGTAAGCAGACAATTGTTGTGAACGTTTATGATACGACCAATCATTCCACACCCATTAATATGTATGGTTCGGATTTTTCCGACACTGGGCTACTGCATATTAGTAAACTTGATTTTGGGGATCCATTAAGAAGGCATGAGATGCATTGTAGATTCAAGCATAAACCTCCACCTCCTTGGACAGCCATCAATTCATCGGTTGGCGTCCTTATCATTACCTTGCTGGTTGGGCATATTTTTCATGCAGCCATAAGTCGGATCACAAAAGTGGAGAATGACTATCACGAGACGATGTGGCTTAAAAGTCTTGCCGAAGCTGCTGATGTTGCAAAATCACAGTTTCTGACAACAATTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGCATGCTGAAATTACTGATGGACACTAACCTTGATTCAAATCAACTGGATTTTGCCCGGACTGCTCACGAGAGTGGAAAAGATCTGATATCTCTTATAAATAAGGTTCTTGATCAAGCTAAGATAGATTCAGGAAGGCTTGAACTTGAATCTGTACCTTTTGATCTGCGTGCTATACTTGATAATGTTCTCTCACCTTTTTCTCTCAAATCCAATGATATGGGAATTGAGTTGGCTGTTTATGTCTCTGATTTGGTGCCTGAAGTTGTCATCGGTGACCCTGGACGTTTTCGTCAAATAATTACTCATCTCGTTGGAAACTCGGTCAAGTTTACTCATAAAAAGGGACACATATTAGTCTCAGTGCATCTGGCTGATGAAGTGAGAGGCCCAGTTGATTTTATGGACATTGTGCTTAGACAAGGCACGTACTTAGCTGGAGATGCATCAAAGAATAGTTGTACTACATTCAGTGGGTTACCTGTGGTGAATAGATGGAAAAGCTGGGAGGATTTCAAAAAGTTCAGCAATACAAATGCGGTGGAGGAACCCAAAACTATTAAAATACTCGTGACCGTTGAGGATACAGGTGTAGGAATTCCCCGAAAAGCACAAAGCCGAATTTTCACTCCTTTTATGCAGGCTGATAGTTCCACTTCACGGATATATGGTGGCACTGGAATAGGATTGAGTATTAGCAAATGTTTGGTCGCTCTCATGGATGGGGAGATCGGGTTTGCGAGTGAGCCTGGTATAGGTAGCACTTTTTCATTTACAGTTTCTTTTCAGAAAGGGGAAACAAATTTTCTGGATACGAGACGGCCACAGTTTGATCTCGGTGTTATGGAGTTCCAGGGGCTAAGAGCTTTAATAATAGATAATAGCTGCATTCGAGCTGAGGTCACGAGATATCATCTGCAGAGGCTCGGGATTTCTGTTGATATAGCTCTGAGTGCAGAATCTGCTTATCAGTATTTATCTAATACTTCCAACACAAGAGCATCGACGCAATTAGCCATGATTCTTATAGACAAAGATATTTGGGACAAGAAAGTGGGTCTGAAGTTCCATCTTCTGTTTAAAGAGCACGTTGATAGAAGTGTGACAAATCTCCAGATGAATACTCCAAAGCTCTTTCTTTTGGCAAACCCCATTAGCTCCAATGAGCTGAATGAACTTAAATCTTCTGGTCATGTAAATAATGTATTGATTAAACCTCTTCAGTTAAACATGTTGGTTAGTTGCTTCCACGAAGCCTTCGGGATTGAGAAGCGGAATCAAGTAATAGTTAAAAGACCTTCTACTCTTAAGAACCTGCTGAAAGACAAGCATATTTTGGTTGTGGATGACAATGCGGTTAACAGAAGGGTGGCAGAAGGTGCCTTGAAGAAATATGGAGCTGTCATAACTTGTGTAGAATGTGGAAAGGATGCGGTGGCTCTCCTCGACCCTCCACACGACTTTGATGCTTGTTTCATGGACCTCCAGATGCCTGAGATGAATGGGTTTGAAGCTACAAGACAGGTTCGTGCTGTAGAAAGAGGGGTAAACGAGAAACTTACATCAGGAGAAGTGTCAACTGAGGACAATAAGGTTTATTGGCACACACCAATATTTGCTATGACGGCAGATTTAATTCAGTCTCTGTATGAACAGTGCCTGAAGTGTGGGATGGATGGTTATGTAGCTAAGCCATTTGAAGAAGAGCAACTTTATTCAGCTCTAGCATGCTATTTCGAGACTACTTGA 3810 41.0 MVNYETDSSWVCEESMLNLCSVEEFYVVGLVWRSWGFLKLLRCLLRMSLNCKFSIFNGKFPAGFKLKKAKEHLCLLNSTGKWKKKLFCLWIFTVVLALGSWFSLRSCNVNSGTKQQISNLFDEETQTLMRHFNVSKNQIQALTALLSESDRMTSMGCINDFGSDKSQLDGIACTLRSLYWEQDLHKQHVWVEGSADSNVGQCPIRTEKVPENSEQLFSEDITVPYATDLSVSLLSSGNQLCGKIIEQAGVLRYFIRKHWKSFYSLLIGCFSVFLGVISFQKTSGFHLKMWNKKHPKPNQPLVHPQWVLQRRKKHQQVKDSPQGAGKWRKVLLRIFIVFGIIGSIWLFWYLNKTAILRREETLANMCDERARMLQDQFNVSMNHVHALAKTFGEYTERTSFERPLTSGVAYALKVNHSEREQFERMHGWTIKKMETEDQTLVQDCNPENLEPAPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYDTDLPPDATPEQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNHSTPINMYGSDFSDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFHAAISRITKVENDYHETMWLKSLAEAADVAKSQFLTTISHEIRTPMNGVLGMLKLLMDTNLDSNQLDFARTAHESGKDLISLINKVLDQAKIDSGRLELESVPFDLRAILDNVLSPFSLKSNDMGIELAVYVSDLVPEVVIGDPGRFRQIITHLVGNSVKFTHKKGHILVSVHLADEVRGPVDFMDIVLRQGTYLAGDASKNSCTTFSGLPVVNRWKSWEDFKKFSNTNAVEEPKTIKILVTVEDTGVGIPRKAQSRIFTPFMQADSSTSRIYGGTGIGLSISKCLVALMDGEIGFASEPGIGSTFSFTVSFQKGETNFLDTRRPQFDLGVMEFQGLRALIIDNSCIRAEVTRYHLQRLGISVDIALSAESAYQYLSNTSNTRASTQLAMILIDKDIWDKKVGLKFHLLFKEHVDRSVTNLQMNTPKLFLLANPISSNELNELKSSGHVNNVLIKPLQLNMLVSCFHEAFGIEKRNQVIVKRPSTLKNLLKDKHILVVDDNAVNRRVAEGALKKYGAVITCVECGKDAVALLDPPHDFDACFMDLQMPEMNGFEATRQVRAVERGVNEKLTSGEVSTEDNKVYWHTPIFAMTADLIQSLYEQCLKCGMDGYVAKPFEEEQLYSALACYFETT 1269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 978809 989322 - CmaCh02G002210.1 Cma02g00221 287972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00221 1269 CDD HATPase_EvgS-ArcB-TorS-like 784 947 - -
Cma02g00221 1269 PRINTS Bacterial sensor protein C-terminal signature 876 890 IPR004358 GO:0016310|GO:0016772
Cma02g00221 1269 PRINTS Bacterial sensor protein C-terminal signature 911 929 IPR004358 GO:0016310|GO:0016772
Cma02g00221 1269 PRINTS Bacterial sensor protein C-terminal signature 935 948 IPR004358 GO:0016310|GO:0016772
Cma02g00221 1269 PRINTS Bacterial sensor protein C-terminal signature 894 904 IPR004358 GO:0016310|GO:0016772
Cma02g00221 1269 ProSiteProfiles Histidine kinase domain profile. 674 951 IPR005467 -
Cma02g00221 1269 SMART CHASE_2 382 581 IPR006189 -
Cma02g00221 1269 SMART HisKA_10 667 732 IPR003661 GO:0000155|GO:0007165
Cma02g00221 1269 PANTHER HISTIDINE KINASE 2 312 1267 - -
Cma02g00221 1269 PANTHER HISTIDINE KINASE 2 77 149 - -
Cma02g00221 1269 ProSiteProfiles CHASE domain profile. 382 606 IPR006189 -
Cma02g00221 1269 Gene3D - 1113 1264 - -
Cma02g00221 1269 CDD HisKA 667 728 IPR003661 GO:0000155|GO:0007165
Cma02g00221 1269 Gene3D - 636 730 - -
Cma02g00221 1269 SUPERFAMILY CheY-like 1128 1265 IPR011006 -
Cma02g00221 1269 ProSiteProfiles Response regulatory domain profile. 1131 1266 IPR001789 GO:0000160
Cma02g00221 1269 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 721 947 IPR036890 -
Cma02g00221 1269 Pfam His Kinase A (phospho-acceptor) domain 667 732 IPR003661 GO:0000155|GO:0007165
Cma02g00221 1269 CDD REC_hyHK_CKI1_RcsC-like 1132 1262 - -
Cma02g00221 1269 SMART REC_2 1130 1262 IPR001789 GO:0000160
Cma02g00221 1269 Pfam Response regulator receiver domain 1132 1262 IPR001789 GO:0000160
Cma02g00221 1269 Gene3D CHASE domain 392 613 IPR042240 -
Cma02g00221 1269 ProSiteProfiles Response regulatory domain profile. 975 1107 IPR001789 GO:0000160
Cma02g00221 1269 SUPERFAMILY CheY-like 970 1107 IPR011006 -
Cma02g00221 1269 SMART HKATPase_4 779 951 IPR003594 -
Cma02g00221 1269 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 658 733 IPR036097 GO:0000155|GO:0007165
Cma02g00221 1269 Gene3D - 350 391 - -
Cma02g00221 1269 Gene3D - 109 151 - -
Cma02g00221 1269 Pfam CHASE domain 389 579 IPR006189 -
Cma02g00221 1269 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 779 949 IPR003594 -
Cma02g00221 1269 Gene3D - 969 1112 - -
Cma02g00221 1269 PANTHER TWO-COMPONENT HISTIDINE KINASE 312 1267 - -
Cma02g00221 1269 PANTHER TWO-COMPONENT HISTIDINE KINASE 77 149 - -
Cma02g00221 1269 Gene3D - 731 954 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00221 Cma-Chr2:978809 Cma11g01285 Cma-Chr11:8585756 0 dispersed
Cma02g00221 Cma-Chr2:978809 Cma20g00673 Cma-Chr20:3087195 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34422 PF03924 CHASE 3.40E-34 CL0165 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00221 K14489 - csv:101221294 2103.18