Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00234 ATGGCGGATTCGGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGGCGAAGGAACAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTACCAGCAAACGCGAAGATCTCGAAAGATGCGAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGTCATATCTGCAGAAGTACAGGGAAATGGAAGGAGAAAAGAGCACTATGGGGGGAGGAAAAGGGGAAAAAGACGGTGGTGGTGGTGGTGGTGGGCCCGGCGGAAGTGGGGCAAATGTTGGTGGTGGTGGTGGTGGTGGAGTCAACCCTGGTACTGGTGGTGGTGTTAGCGGCGGTGGATTCAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGTGCATCATCAGGGTGGTGTTTATGGCAGTGGTGGATTTCACCACATGGGAATCGGCGGCGGGAAGGGAGGAAATGGTGGTTCCGGCACCGGACACCGATAG 633 53.87 MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTMGGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMVHHQGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1048906 1049538 + CmaCh02G002340.1 Cma02g00234 287985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00234 210 MobiDBLite consensus disorder prediction 1 24 - -
Cma02g00234 210 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 185 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cma02g00234 210 SUPERFAMILY Histone-fold 24 128 IPR009072 GO:0046982
Cma02g00234 210 MobiDBLite consensus disorder prediction 116 149 - -
Cma02g00234 210 MobiDBLite consensus disorder prediction 1 21 - -
Cma02g00234 210 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Cma02g00234 210 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 185 - -
Cma02g00234 210 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cma02g00234 210 Gene3D Histone, subunit A 15 131 IPR009072 GO:0046982
Cma02g00234 210 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Cma02g00234 210 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Cma02g00234 210 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00234 Cma-Chr2:1048906 Cma06g00678 Cma-Chr6:3385698 9.49E-66 dispersed
Cma02g01319 Cma-Chr2:7741554 Cma02g00234 Cma-Chr2:1048906 1.08E-08 dispersed
Cma16g00962 Cma-Chr16:7443314 Cma02g00234 Cma-Chr2:1048906 2.44E-44 dispersed
Cma16g00965 Cma-Chr16:7456100 Cma02g00234 Cma-Chr2:1048906 1.78E-61 transposed
Cma10g01088 Cma-Chr10:7192352 Cma02g00234 Cma-Chr2:1048906 8.82E-34 transposed
Cma17g01111 Cma-Chr17:7785153 Cma02g00234 Cma-Chr2:1048906 1.88E-51 transposed
Cma02g00234 Cma-Chr2:1048906 Cma20g00686 Cma-Chr20:3142972 2.16E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34425 PF00808 CBFD_NFYB_HMF 2.10E-27 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00234 K08065 - csv:101219076 239.58