Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g00234 | ATGGCGGATTCGGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTATCGGCGAAGGAACAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTACCAGCAAACGCGAAGATCTCGAAAGATGCGAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTGCTGTGGGCCATGACGACGCTAGGATTCGAAGAGTATGTGGAACCGCTCAAGTCATATCTGCAGAAGTACAGGGAAATGGAAGGAGAAAAGAGCACTATGGGGGGAGGAAAAGGGGAAAAAGACGGTGGTGGTGGTGGTGGTGGGCCCGGCGGAAGTGGGGCAAATGTTGGTGGTGGTGGTGGTGGTGGAGTCAACCCTGGTACTGGTGGTGGTGTTAGCGGCGGTGGATTCAACGGAGTGGGTGGAATGTATGGTGGGATGATGATGATGGTGCATCATCAGGGTGGTGTTTATGGCAGTGGTGGATTTCACCACATGGGAATCGGCGGCGGGAAGGGAGGAAATGGTGGTTCCGGCACCGGACACCGATAG | 633 | 53.87 | MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTMGGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGTGGGVSGGGFNGVGGMYGGMMMMVHHQGGVYGSGGFHHMGIGGGKGGNGGSGTGHR | 210 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1048906 | 1049538 | + | CmaCh02G002340.1 | Cma02g00234 | 287985 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g00234 | 210 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cma02g00234 | 210 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 185 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Cma02g00234 | 210 | SUPERFAMILY | Histone-fold | 24 | 128 | IPR009072 | GO:0046982 | |
Cma02g00234 | 210 | MobiDBLite | consensus disorder prediction | 116 | 149 | - | - | |
Cma02g00234 | 210 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cma02g00234 | 210 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 27 | 91 | IPR003958 | - | |
Cma02g00234 | 210 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 | 1 | 185 | - | - | |
Cma02g00234 | 210 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 58 | 74 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cma02g00234 | 210 | Gene3D | Histone, subunit A | 15 | 131 | IPR009072 | GO:0046982 | |
Cma02g00234 | 210 | PRINTS | CCAAT-binding transcription factor subunit A signature | 55 | 73 | - | - | |
Cma02g00234 | 210 | PRINTS | CCAAT-binding transcription factor subunit A signature | 74 | 92 | - | - | |
Cma02g00234 | 210 | PRINTS | CCAAT-binding transcription factor subunit A signature | 93 | 111 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00234 | Cma-Chr2:1048906 | Cma06g00678 | Cma-Chr6:3385698 | 9.49E-66 | dispersed | |
Cma02g01319 | Cma-Chr2:7741554 | Cma02g00234 | Cma-Chr2:1048906 | 1.08E-08 | dispersed | |
Cma16g00962 | Cma-Chr16:7443314 | Cma02g00234 | Cma-Chr2:1048906 | 2.44E-44 | dispersed | |
Cma16g00965 | Cma-Chr16:7456100 | Cma02g00234 | Cma-Chr2:1048906 | 1.78E-61 | transposed | |
Cma10g01088 | Cma-Chr10:7192352 | Cma02g00234 | Cma-Chr2:1048906 | 8.82E-34 | transposed | |
Cma17g01111 | Cma-Chr17:7785153 | Cma02g00234 | Cma-Chr2:1048906 | 1.88E-51 | transposed | |
Cma02g00234 | Cma-Chr2:1048906 | Cma20g00686 | Cma-Chr20:3142972 | 2.16E-84 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34425 | PF00808 | CBFD_NFYB_HMF | 2.10E-27 | CL0012 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g00234 | K08065 | - | csv:101219076 | 239.58 |