Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma02g00241 | ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGAGTGATCCTTGTGAATACGGCAATATCGATTTCCATATTCAAAGGCATAGTTCGGTCGATCCTCCATGTCGTTGGCATCCATCTTTCGACACCATCATCATCAGATTCCATGGAGAATTCTCCTGAATCCATAGACTTCTGTCTTAATCCAAATGGAGGCTACATTGAAGAGTTCCGTAGTCGGATCCCAGCAATTCTGTTTGACAAAGTTCGTAGCTGCAAATGGCTAGAACACGACTGCTCGGTCTGCCTTACCCAGTTTGAACCTGAATCAGAGATAAACCATCTATCTTGTGGCCATGTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACGTTACTTGCCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGAGACAGCCTCCTGCTTCTGGTGA | 456 | 47.15 | MGLSSLPAPSEGVLGVILVNTAISISIFKGIVRSILHVVGIHLSTPSSSDSMENSPESIDFCLNPNGGYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHVFHRVCLEKWLDYWNVTCPLCRTPLMPEEETASCFW | 151 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 1070702 | 1071157 | - | CmaCh02G002410.1 | Cma02g00241 | 287992 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma02g00241 | 151 | Pfam | Ring finger domain | 94 | 137 | IPR001841 | - | |
| Cma02g00241 | 151 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 1 | 151 | - | - | |
| Cma02g00241 | 151 | SUPERFAMILY | RING/U-box | 84 | 143 | - | - | |
| Cma02g00241 | 151 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 142 | IPR013083 | - | |
| Cma02g00241 | 151 | SMART | ring_2 | 95 | 136 | IPR001841 | - | |
| Cma02g00241 | 151 | ProSiteProfiles | Zinc finger RING-type profile. | 95 | 137 | IPR001841 | - | |
| Cma02g00241 | 151 | PANTHER | - | 1 | 151 | IPR044249 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma02g00241 | Cma20g00706 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma02g00241 | Cma-Chr2:1070702 | Cma20g00706 | Cma-Chr20:3255362 | 1.61E-96 | dispersed | |
| Cma17g00457 | Cma-Chr17:2743975 | Cma02g00241 | Cma-Chr2:1070702 | 6.51E-06 | dispersed | |
| Cma19g00840 | Cma-Chr19:7939558 | Cma02g00241 | Cma-Chr2:1070702 | 2.99E-21 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma02g00241 | K16285 | - | csv:101216645 | 290.426 |