Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00242 ATGATTTTAAAACGCAGTCTATTAAGAAAGAGCAAACAAACCAACCTCCCTCCTGCTTCTAGGGTTTCTCTCTTTCCCCCCTTTTTAATTTCTTCTTTCCTCCTGCAATTATTTTCTTCAATTCTTCTCAAAAGCTCCTCATTTGGAAGAAATTCAACACATTTGGCAGTGCTTGGATTTGATAAGAGCTCTGATAATCTGAGCTCAGAGAGATTTGAAAATTCATTTGGAAAGATGGGTGTTATGTGTGATTTTTGTGGGGATCAAAGGGCAATGGTTTTCTGTCGATCTGATGTTGCTTGTTTGTGCTTATCTTGTGATCGTAATGTTCACTCGGCTAATGCCTTGTCGAGGCGACATACAAGAACACTGCTATGTGAAAGATGCCATTTGCAACCTGCCTCAGTAAGATGTATTGATGAGAGGGTTTCTCTGTGTCAAAATTGTGACTGGACGGGTCATGGCACGTCTACGACTTCATCATCGCACAAGAGGCAAGCCATCAATTGTTACTCTGGTTGTCCATCAGCTGCTGAGCTTTCTTCCATCTGGTCCTTTGTTTTGGAGGTTCCCTCTGTGAATGATGCTTGTGAGAAAGAGATGGGATTGATGAGCATTTCTGAGACCGACTTGACGGGAGCTTCGAGCCCTTTGGAGAATAACAACGCCTGTCGAAGAATGCCCGAGTCGACTGAAGCCAGAGATGTTTGCAGCAGGGACAAATCAAATATTTTGGTTGGATCATCTTCACTCTCGGACTTTGGCTCTAGGCCTCACATTTCAGATCAGCCCGTTGAATTGGCTAATATGGCTGTACCCAAGTTTTGCTGTCCTGGAACAAAACTTCCCGGATTCTGCGACGACGACGACGACATCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTCGAAAATTACGAGGAGCTATTTGGTATGAGCCTTAATCACTCTGAAGATCTTTTTGAGAACGGTGGAATCGATAGCCTTTTCGAGGCCAAAGGCTTTGACGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGCTCTTCTGTTGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAATGGTGCATCTGCTGACTCGGTTATGAGTACTAAAACCGAACCGATTCTCTGTTTTAATTCAAGGCAAGCATCGGGTGTGTCGTTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGCTTCTTCAATGCTTCTAATGGGAGAGCCTCCTCCTTGGTGTGCTCCTGGCACTGAAAGTTCGATCCCATCTTCTGATCGTAACAATGCCGTTCTACGTTACAAGGAGAAAAAGAAGACGCGCAAATTTGAGAAACGAGTTAGATACGCCACACGCAAAGCTCGAGCCGATGTCAGAAGGCGAGTGAAGGGACGCTTTGTGAAGGTTGGAGAGGCTTATGATTACGACCCATACATACTTTATTTATCTAACCAGGGGATGATTTTGATGCATGATGATAAGCTGTCTCATTATATCACAGGAAGGTTCGACGAAAGATCGCATCCAAAACAGCGGTTCGGAAGGTTCCACGACCAAACTTTCCGGGGAGAACTCGAAAAGGGTGTATAG 1617 44.9 MILKRSLLRKSKQTNLPPASRVSLFPPFLISSFLLQLFSSILLKSSSFGRNSTHLAVLGFDKSSDNLSSERFENSFGKMGVMCDFCGDQRAMVFCRSDVACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPASVRCIDERVSLCQNCDWTGHGTSTTSSSHKRQAINCYSGCPSAAELSSIWSFVLEVPSVNDACEKEMGLMSISETDLTGASSPLENNNACRRMPESTEARDVCSRDKSNILVGSSSLSDFGSRPHISDQPVELANMAVPKFCCPGTKLPGFCDDDDDIYKEFDMDEMDLNLENYEELFGMSLNHSEDLFENGGIDSLFEAKGFDDSVCHSAVAAEGSSVGVVKPMQPACSNGASADSVMSTKTEPILCFNSRQASGVSFSGLTGESSAGDYQDCGASSMLLMGEPPPWCAPGTESSIPSSDRNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKVGEAYDYDPYILYLSNQGMILMHDDKLSHYITGRFDERSHPKQRFGRFHDQTFRGELEKGV 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1075294 1080440 - CmaCh02G002420.1 Cma02g00242 287993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00242 538 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 79 487 - -
Cma02g00242 538 ProSiteProfiles Zinc finger B-box type profile. 121 168 IPR000315 GO:0008270
Cma02g00242 538 CDD Bbox1_BBX-like 125 168 - -
Cma02g00242 538 ProSiteProfiles CCT domain profile. 436 478 IPR010402 GO:0005515
Cma02g00242 538 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 79 487 - -
Cma02g00242 538 CDD Bbox1_BBX-like 83 125 - -
Cma02g00242 538 Pfam B-box zinc finger 82 123 IPR000315 GO:0008270
Cma02g00242 538 ProSiteProfiles Zinc finger B-box type profile. 78 125 IPR000315 GO:0008270
Cma02g00242 538 SMART bboxneu5 126 168 IPR000315 GO:0008270
Cma02g00242 538 SMART bboxneu5 78 125 IPR000315 GO:0008270
Cma02g00242 538 Pfam CCT motif 436 478 IPR010402 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00242 - - - cmos:111451690 823.542
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00242 Cma19g00837 CCT
Cma02g00242 Cma20g00636 CST
Cma02g00242 Cma20g00703 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00242 Cma-Chr2:1075294 Cma11g01303 Cma-Chr11:8677273 1.77E-153 dispersed
Cma19g00837 Cma-Chr19:7927917 Cma02g00242 Cma-Chr2:1075294 2.21E-176 wgd
Cma02g00242 Cma-Chr2:1075294 Cma20g00703 Cma-Chr20:3247766 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g541 Blo02g00107 . . Bda13g00629 . Bpe15g00764 . . . . Cma02g00242 Cma20g00636 Car02g00129 Car20g00602 . . . . . . . . . . . . . . . . . Cone3ag1271 . Cone8ag1452 Cone12ag1396 . . Chy11g00733 . . . . . Bpe14g00696 . Bma02g01294 . . Cmo02g00244 Cmo20g00608 . . . . Cpe16g00362 Cpe05g01383 Bhi10g01471 . . . Hepe08g0483 . . Cla02g00819 Cam02g0985 Cec02g0874 Cco02g0903 Clacu02g0865 Cmu02g0856 Cre02g1172 . . . Cme11g00764
Vvi12g737 . Blo15g00433 . . Bpe12g00169 Bpe15g00764 Bma03g00658 Bma08g00690 . Cmo19g00853 Cma02g00242 Cma20g00703 . . . Cpe15g00673 Cpe04g00659 Bhi05g01505 . . Lac12g0415 Hepe02g0327 . . Cla02g00307 Cam02g0316 Cec02g0317 Cco02g0319 Clacu02g0307 Cmu02g0306 Cre02g0639 Cone3ag1271 . Cone8ag1358 Cone12ag1303 . Csa07g00235 Chy11g00733 Cme01g00573 . Blo13g00448 Bda14g00661 . . Bpe07g00668 Bma02g01294 Bma12g00873 . Cmo02g00244 . . Cma19g00837 Car11g01444 Car19g00649 . Cpe05g01383 Bhi10g01288 . . . Hepe08g0372 . . . . . . . . . Lsi11g01330 Csa06g00975 Chy01g00545 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00377 CCT 6 333 C2C2-CO-like Transcription Factor Family AT5G15850 50.4 2.5e-45 180.3
Cma12g00377 CCT 4 333 C2C2-CO-like Transcription Factor Family AT3G02380 50.6 1.5e-42 171.0
Cma05g00338 CCT 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 5.3e-83 305.4
Cma12g00377 CCT 1 333 C2C2-CO-like Transcription Factor Family AT5G24930 59.2 1.9e-77 287.0
Cma11g00415 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 2.5e-56 216.9
Cma10g00418 CCT,CST 75 429 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 1.5e-53 207.6
Cma11g00415 CCT,CST 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.3 3.2e-64 243.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 55.5 3.2e-91 332.8
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 8.1e-87 318.2
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT3G07650 54.4 8.1e-87 318.2
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.9 1.1e-83 307.8
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT5G48250 56.0 1.8e-86 317.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 2.4e-86 316.6
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 3.4e-85 312.8
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 6.7e-81 298.5
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT5G48250 56.0 1.8e-86 317.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 2.4e-86 316.6
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 3.4e-85 312.8
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 6.7e-81 298.5
Cma11g01083 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 56.7 4.4e-52 202.6
Cma19g00687 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT1G75540 52.9 1.7e-48 190.7
Cma04g00659 CST 1 203 C2C2-CO-like Transcription Factor Family AT1G78600 54.7 3.7e-56 216.1
Cma16g00606 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 61.4 7.6e-56 214.2
Cma07g00442 CST 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 4.1e-49 191.8
Cma03g00703 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 1.0e-47 187.2
Cma16g00606 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 64.0 1.5e-57 219.9
Cma07g00442 CST 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 66.9 1.3e-50 196.8
Cma03g00703 CST 1 143 C2C2-CO-like Transcription Factor Family AT4G38960 65.0 2.8e-48 189.1
Cma11g01083 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 58.4 1.5e-52 203.8
Cma19g00687 CCT,ECH 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 55.6 6.7e-50 194.9
Cma12g00429 CCT,CST,ECH 26 231 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.5e-44 176.4
Cma05g00283 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.2 4.2e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34426 PF06203 CCT 4.10E-15 CL0281 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00242 Cma_Chr02 FPKM 15.227582 15.571346 21.326521 23.545616 33.283188 32.159256 31.999298 11.184011 11.86595 11.72275