Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00242 ATGATTTTAAAACGCAGTCTATTAAGAAAGAGCAAACAAACCAACCTCCCTCCTGCTTCTAGGGTTTCTCTCTTTCCCCCCTTTTTAATTTCTTCTTTCCTCCTGCAATTATTTTCTTCAATTCTTCTCAAAAGCTCCTCATTTGGAAGAAATTCAACACATTTGGCAGTGCTTGGATTTGATAAGAGCTCTGATAATCTGAGCTCAGAGAGATTTGAAAATTCATTTGGAAAGATGGGTGTTATGTGTGATTTTTGTGGGGATCAAAGGGCAATGGTTTTCTGTCGATCTGATGTTGCTTGTTTGTGCTTATCTTGTGATCGTAATGTTCACTCGGCTAATGCCTTGTCGAGGCGACATACAAGAACACTGCTATGTGAAAGATGCCATTTGCAACCTGCCTCAGTAAGATGTATTGATGAGAGGGTTTCTCTGTGTCAAAATTGTGACTGGACGGGTCATGGCACGTCTACGACTTCATCATCGCACAAGAGGCAAGCCATCAATTGTTACTCTGGTTGTCCATCAGCTGCTGAGCTTTCTTCCATCTGGTCCTTTGTTTTGGAGGTTCCCTCTGTGAATGATGCTTGTGAGAAAGAGATGGGATTGATGAGCATTTCTGAGACCGACTTGACGGGAGCTTCGAGCCCTTTGGAGAATAACAACGCCTGTCGAAGAATGCCCGAGTCGACTGAAGCCAGAGATGTTTGCAGCAGGGACAAATCAAATATTTTGGTTGGATCATCTTCACTCTCGGACTTTGGCTCTAGGCCTCACATTTCAGATCAGCCCGTTGAATTGGCTAATATGGCTGTACCCAAGTTTTGCTGTCCTGGAACAAAACTTCCCGGATTCTGCGACGACGACGACGACATCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTCGAAAATTACGAGGAGCTATTTGGTATGAGCCTTAATCACTCTGAAGATCTTTTTGAGAACGGTGGAATCGATAGCCTTTTCGAGGCCAAAGGCTTTGACGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGCTCTTCTGTTGGAGTGGTCAAACCAATGCAGCCAGCCTGCAGCAATGGTGCATCTGCTGACTCGGTTATGAGTACTAAAACCGAACCGATTCTCTGTTTTAATTCAAGGCAAGCATCGGGTGTGTCGTTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATTATCAAGACTGTGGAGCTTCTTCAATGCTTCTAATGGGAGAGCCTCCTCCTTGGTGTGCTCCTGGCACTGAAAGTTCGATCCCATCTTCTGATCGTAACAATGCCGTTCTACGTTACAAGGAGAAAAAGAAGACGCGCAAATTTGAGAAACGAGTTAGATACGCCACACGCAAAGCTCGAGCCGATGTCAGAAGGCGAGTGAAGGGACGCTTTGTGAAGGTTGGAGAGGCTTATGATTACGACCCATACATACTTTATTTATCTAACCAGGGGATGATTTTGATGCATGATGATAAGCTGTCTCATTATATCACAGGAAGGTTCGACGAAAGATCGCATCCAAAACAGCGGTTCGGAAGGTTCCACGACCAAACTTTCCGGGGAGAACTCGAAAAGGGTGTATAG 1617 44.9 MILKRSLLRKSKQTNLPPASRVSLFPPFLISSFLLQLFSSILLKSSSFGRNSTHLAVLGFDKSSDNLSSERFENSFGKMGVMCDFCGDQRAMVFCRSDVACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPASVRCIDERVSLCQNCDWTGHGTSTTSSSHKRQAINCYSGCPSAAELSSIWSFVLEVPSVNDACEKEMGLMSISETDLTGASSPLENNNACRRMPESTEARDVCSRDKSNILVGSSSLSDFGSRPHISDQPVELANMAVPKFCCPGTKLPGFCDDDDDIYKEFDMDEMDLNLENYEELFGMSLNHSEDLFENGGIDSLFEAKGFDDSVCHSAVAAEGSSVGVVKPMQPACSNGASADSVMSTKTEPILCFNSRQASGVSFSGLTGESSAGDYQDCGASSMLLMGEPPPWCAPGTESSIPSSDRNNAVLRYKEKKKTRKFEKRVRYATRKARADVRRRVKGRFVKVGEAYDYDPYILYLSNQGMILMHDDKLSHYITGRFDERSHPKQRFGRFHDQTFRGELEKGV 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1075294 1080440 - CmaCh02G002420.1 Cma02g00242 287993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00242 538 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 79 487 - -
Cma02g00242 538 ProSiteProfiles Zinc finger B-box type profile. 121 168 IPR000315 GO:0008270
Cma02g00242 538 CDD Bbox1_BBX-like 125 168 - -
Cma02g00242 538 ProSiteProfiles CCT domain profile. 436 478 IPR010402 GO:0005515
Cma02g00242 538 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 79 487 - -
Cma02g00242 538 CDD Bbox1_BBX-like 83 125 - -
Cma02g00242 538 Pfam B-box zinc finger 82 123 IPR000315 GO:0008270
Cma02g00242 538 ProSiteProfiles Zinc finger B-box type profile. 78 125 IPR000315 GO:0008270
Cma02g00242 538 SMART bboxneu5 126 168 IPR000315 GO:0008270
Cma02g00242 538 SMART bboxneu5 78 125 IPR000315 GO:0008270
Cma02g00242 538 Pfam CCT motif 436 478 IPR010402 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00242 Cma19g00837 CCT
Cma02g00242 Cma20g00636 CST
Cma02g00242 Cma20g00703 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00242 Cma-Chr2:1075294 Cma11g01303 Cma-Chr11:8677273 1.77E-153 dispersed
Cma19g00837 Cma-Chr19:7927917 Cma02g00242 Cma-Chr2:1075294 2.21E-176 wgd
Cma02g00242 Cma-Chr2:1075294 Cma20g00703 Cma-Chr20:3247766 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34426 PF06203 CCT 4.10E-15 CL0281 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00242 - - cmos:111451690 823.542