Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00244 ATGCCTCGAGGATTCTCTTTTTTGTATCAACCGCGATGCCTCCTTCTCTTGATCATCTTCCTTATCTTCCTTGTTTTCACGCTGTTTACCCCTAAGCAGAGGGAAGAGAAACTAGAAGAGGAGCCGGAAATCACCCACAGGGTTTACTTGGATATTGATATTGATGAACAGAGATTAGGTAGAATCGTGATTGGATTATATGGCCAAGTTGTGCCTAAAACTGTAGAAAATTTTAGGGCTCTATGCACAGGGGAGAAAGGTAAAACTACAAGTGGAAAAGCACTCCATTATAAGGGAACACCACTCCATCGTATTATATCTGGTTTTGTGATTCAAGGTGGTGATATCTTATACGGTGATGGAAAAGGATACGAGTCAATCTATGGTGGCACATTTCCTGATGAGAACTTTAAAATAAAACATTCACACGCAGGTGTTGTCTCCATGGTAAACTCAGGACCTGATTCAAATGGCTCACAATTTTTCATTACCACCATTAAGTCCAGCTGGTTAGATGGGGAGCATGTTGTGTTTGGCAAGGTTATCCAAGGGATGGATAATGTATATGCAATTGAAGGCGGAGCTGGAACCTATAGTGGGAAACCTAGAAAGAAGGTAACCATTGCTGACAGTGGCGAGATACCCAAGAGCAAGTGGGATGAGGAAACATGA 672 42.11 MPRGFSFLYQPRCLLLLIIFLIFLVFTLFTPKQREEKLEEEPEITHRVYLDIDIDEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGKTTSGKALHYKGTPLHRIISGFVIQGGDILYGDGKGYESIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTIKSSWLDGEHVVFGKVIQGMDNVYAIEGGAGTYSGKPRKKVTIADSGEIPKSKWDEET 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1088882 1093184 + CmaCh02G002440.1 Cma02g00244 287995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00244 223 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 52 211 IPR002130 GO:0000413|GO:0003755
Cma02g00244 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 28 223 - -
Cma02g00244 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 66 81 IPR002130 GO:0000413|GO:0003755
Cma02g00244 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 102 114 IPR002130 GO:0000413|GO:0003755
Cma02g00244 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 160 IPR002130 GO:0000413|GO:0003755
Cma02g00244 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 160 172 IPR002130 GO:0000413|GO:0003755
Cma02g00244 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 188 IPR002130 GO:0000413|GO:0003755
Cma02g00244 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 28 223 - -
Cma02g00244 223 Gene3D - 34 220 IPR029000 -
Cma02g00244 223 SUPERFAMILY Cyclophilin-like 43 214 IPR029000 -
Cma02g00244 223 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 49 213 IPR002130 GO:0000413|GO:0003755
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00244 - - - csv:101216978 400.593
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00244 Cma-Chr2:1088882 Cma02g00742 Cma-Chr2:4504693 2.60E-77 dispersed
Cma05g01245 Cma-Chr5:9561221 Cma02g00244 Cma-Chr2:1088882 2.48E-18 transposed
Cma11g01393 Cma-Chr11:9182797 Cma02g00244 Cma-Chr2:1088882 2.28E-62 wgd
Cma19g00725 Cma-Chr19:7323413 Cma02g00244 Cma-Chr2:1088882 1.44E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g142 . Blo15g00374 Bda06g00481 . Bpe07g00720 . Bma05g00416 Bma12g00927 . . Cma02g00244 . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00483 . Chy11g00269 . . . . . . . . . Sed01g0205 Cmo02g00246 . . . . . . Cpe05g01381 Bhi10g01864 Tan05g1156 Cmetu11g0137 . Hepe08g0282 . . Cla02g01156 Cam02g1232 Cec02g1241 Cco02g1281 Clacu02g1213 Cmu02g1182 Cre02g1491 . Csa02g01379 . Cme11g00391
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012364 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00244 Cma_Chr02 FPKM 15.368189 18.432453 15.662142 14.956212 20.070713 18.394392 23.248587 17.595459 16.446264 18.377056