Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00247 ATGGCCGCTTGTTTCGCCACTTCTCTCTCCTCTTCCATCTTCTTCTCTCTCCTCCTGTTAATCCATGGCTCTACAGTTCCGGCTGATCCGCCATTGAAGACCTTCATCTTCCGAGTGGACCGTTTCGCTAAACCCTCTGTTTTTCCCACCCATTTCCACTGGTACACTTCCGAGTTCGCCGAATCCCACAAAATCCTCCATGTTTACGACACCGTGTTTCATGGATTCTCTGCAACTTTCACTCAAGAGCAAGCCGATTCCGTCGGAAAACACCCTTCTGTGCTTGCTGTCTTTGAGGACCGTCGCCGTCAGCTTCACACCACGCGTTCCCCTCAATTTCTCGGCCTTCGAAACCAGCGTGGTTTGTGGTCTGATTCCGATTATGGGTCGGATGTAATCATTGGAGTTTTCGATACTGGGATTTGCCCTGAACGGCGGAGCTTCTCCGATGTGAATTTGGGGCCGATTCCTCGCCGGTGGAAAGGGGTTTGTCAGACTGGAACTAAGTTCACGGCCAAAAACTGTAATAGGAAGATCGTCGGTGCGAGGTTTTTCTCTAAGGGTCACGAAGCAGGGTCCAACGCAGATGGTCCGATTATTGGGATTAACGACACCGTTGAGTACCGATCTCCGAGAGACGCCGACGGCCATGGGACTCACACGGCATCGACGGCGGCTGGGCGTCACGCGTTTCAGGCGAGTTTGGAGGGTTATGCTTCGGGAATCGCGAAGGGTGTGGCCCCTAAGGCACGTTTGGCGGTTTACAAAGTTTGTTGGAAAAATTCGGGTTGTTTCGATTCGGATATTCTGGCGGCGTTTGATTCTGCTGTTAACGACGGCGTCGATGTCATTTCGATCTCGATTGGTGGCGGCGATGGCGTTTCCACGCCGTATTATCTTGACCCAATTGCAATCGGGGCGTACGGCGCCGCTTCTAGGGGCATTTTCGTTTCGTCTTCGGCTGGCAACGATGGACCCAATGGGATGTCAGTGACGAACTTAGCGCCGTGGATTACGACGGTCGGAGCTGGTACGATTGACCGGAATTTCCCGGCGGTGGTGATTATGGGAAACCGACGGAAGATTCACGGCGTTTCGCTGTACGCCGGAGCGCCATTGAACGGTACAATGTATCCGTTGGTTTACCCTGGAAAATCAGGGGAGCTCTCTGCTTCGCTCTGTATGGAGAGTTCGCTTGACCCTAAGATTGTGACCGGAAAAATTGTTATCTGCGACAGAGGAAGTAGCCCGAGAGTGGCGAAGGGTTTGGTGGTGAAGAAGGCCGGCGGCGTTGGAATGATTCTGGCGAATGGAATTTCGAACGGCGAAGGACTCGTCGGCGATGCCCATATCCTTCCCGCCTGCGCCGTCGGCTCTGTAGAAGGCGATGCCATGAAAGCCTACGCATCGTCCTCTAGAAATCCCACCGCCACCATCGCCTTCCGAGGCACACGAATCGGAATCAAACCGGCGCCGGTGGTGGCTTCGTTTTCTGCAAGAGGGCCAAATGGATTAAACCCTGAAATTCTAAAACCGGACATGATTGCACCAGGGGTTAACATTTTAGCCGCTTGGACAGACGTCGTCGGCCCAACCGGTTTAGACTTCGATACACGAAAAATAGAGTTCAATATCTTGTCAGGTACATCAATGGCATGTCCTCATATAAGTGGAGCCGCCGCTCTATTGAAATCAGCACATCTCGATTGGAGTCCAGCGGCGATAAGATCCGCCATGATGACCACCGCAAAAATCACCGACAACCGATGGCAGCCGACGACAGAAGAATCCACTGGAAAAGCTTCTACGCCGTACGATTTCGGTGCCGGTCATGTGAATCTCGGCCTCGCAATGGACCCTGGACTAGTCTACGACATTACAAACACCGATTATGTCAACTTCCTATGCTCAATTGGCTACGGAGCGAAGATGATCCAGGTCATATCTCGAACGCCGGTGAAATGTCCGGCGAGGAAGCCATTGCCAGGGAATTTGAACTACCCATCAATTGTAGCAGTGTTTTCCAGTCTATCAAAAGTGTTGTCCACAAAATCGTTTATCCGAACGGCGACGAACGTGGGGGCGGCAAATTCGGTGTACCAAGCTAAAATCGAAGCTCCGAAAGGGGTGACGGTGAAGGTAAAGCCGTCGAAACTGGTATTCTCAACGGCGGTGAAGAAACAGAGCTTCGTAGTGGCCATATCAGCCAACAACCAGAATCTGACACTAGGCAATGTGGGTGCAGTCTTTGGTTCTCTTTCTTGGTCTGATGGAAAACATGTAGTCCGAATGCCACTGGTAGTTACAAAATTAGAGCCGTTGTAA 2325 51.91 MAACFATSLSSSIFFSLLLLIHGSTVPADPPLKTFIFRVDRFAKPSVFPTHFHWYTSEFAESHKILHVYDTVFHGFSATFTQEQADSVGKHPSVLAVFEDRRRQLHTTRSPQFLGLRNQRGLWSDSDYGSDVIIGVFDTGICPERRSFSDVNLGPIPRRWKGVCQTGTKFTAKNCNRKIVGARFFSKGHEAGSNADGPIIGINDTVEYRSPRDADGHGTHTASTAAGRHAFQASLEGYASGIAKGVAPKARLAVYKVCWKNSGCFDSDILAAFDSAVNDGVDVISISIGGGDGVSTPYYLDPIAIGAYGAASRGIFVSSSAGNDGPNGMSVTNLAPWITTVGAGTIDRNFPAVVIMGNRRKIHGVSLYAGAPLNGTMYPLVYPGKSGELSASLCMESSLDPKIVTGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHILPACAVGSVEGDAMKAYASSSRNPTATIAFRGTRIGIKPAPVVASFSARGPNGLNPEILKPDMIAPGVNILAAWTDVVGPTGLDFDTRKIEFNILSGTSMACPHISGAAALLKSAHLDWSPAAIRSAMMTTAKITDNRWQPTTEESTGKASTPYDFGAGHVNLGLAMDPGLVYDITNTDYVNFLCSIGYGAKMIQVISRTPVKCPARKPLPGNLNYPSIVAVFSSLSKVLSTKSFIRTATNVGAANSVYQAKIEAPKGVTVKVKPSKLVFSTAVKKQSFVVAISANNQNLTLGNVGAVFGSLSWSDGKHVVRMPLVVTKLEPL 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1104197 1106521 + CmaCh02G002470.1 Cma02g00247 287998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00247 774 ProSitePatterns Serine proteases, subtilase family, serine active site. 548 558 IPR023828 -
Cma02g00247 774 PRINTS Subtilisin serine protease family (S8) signature 129 148 IPR015500 -
Cma02g00247 774 PRINTS Subtilisin serine protease family (S8) signature 213 226 IPR015500 -
Cma02g00247 774 PRINTS Subtilisin serine protease family (S8) signature 547 563 IPR015500 -
Cma02g00247 774 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 22 768 - -
Cma02g00247 774 Pfam PA domain 378 464 IPR003137 -
Cma02g00247 774 Pfam Fibronectin type-III domain 664 768 IPR041469 -
Cma02g00247 774 Gene3D - 347 487 - -
Cma02g00247 774 CDD Peptidases_S8_3 104 583 IPR034197 -
Cma02g00247 774 Pfam Peptidase inhibitor I9 48 106 IPR010259 -
Cma02g00247 774 Gene3D - 635 771 - -
Cma02g00247 774 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 22 768 IPR045051 -
Cma02g00247 774 ProSiteProfiles Serine proteases, subtilase domain profile. 104 618 - -
Cma02g00247 774 CDD PA_subtilisin_like 353 479 - -
Cma02g00247 774 Pfam Subtilase family 129 593 IPR000209 GO:0006508|GO:0008236
Cma02g00247 774 Gene3D Peptidase S8/S53 domain 131 631 IPR036852 GO:0004252|GO:0006508
Cma02g00247 774 SUPERFAMILY PA domain 404 472 IPR046450 -
Cma02g00247 774 SUPERFAMILY Subtilisin-like 105 622 IPR036852 GO:0004252|GO:0006508
Cma02g00247 774 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 30 106 IPR037045 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00247 Cma20g00757 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00247 Cma-Chr2:1104197 Cma08g00827 Cma-Chr8:5012638 0 dispersed
Cma10g00622 Cma-Chr10:2862927 Cma02g00247 Cma-Chr2:1104197 8.29E-07 dispersed
Cma02g00247 Cma-Chr2:1104197 Cma20g00757 Cma-Chr20:3568839 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00247 - - csv:101217844 1363.59