Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00257 ATGGAAACTCGGAGCAGAAAGCGGGCGGAGGCCTCCTCAGCAGCCCCTTCTTCTTCGTCTTCTGGTCCTACTACTCGTTCTAGCAAGCGCGCTCGTCTCTCTGGTACTTCCTCATTGAATCTTGCAGCATCGACTCTTTCGATCTCAAAGCGTTCTCGCTCTACTCGAACCCAAGAACCATCTGCCACCAGTACTCCAATGGACTCCACCAATGAATCATCGGGGTCACGCCGTCGAGGGAAGAACTCCGATAAAGAAAATTCGGATAAGGGGAAGGAGAAAGAACATGAGGTTAGAATTGGGGATAGAGAAAAAAATGCGGAGCAAAGCTTTGGGCTTAATATTGAAGGCAGTGGCGGTGGAGAGGATGACGATAACGACAGTGAAGGAGGGATGGGAGTCTTGCAGCATAATTTATCCACCGCAAGTAGCGCCCTTCAAGGACTTTTGAGGAAACTCGGTGCTGGACTGGATGATTTACTTCCTTCTTCTGCAATTGCATCGGCTTCTTTCTCGCAGCAGAGAGGACGGCTTAAGAAGATCTTGTCTGGGTTGAGAGCGGATGGAGAAGAAGGGAGGCAAGTTGAGGCATTGACACAACTTTGTGAGATGCTCTCAATCGGCACCGAGGAATCTCTAAGTACTTTCTCTGTAGATTCCTTTGTCCCTGTCCTTGTTGGGTTACTTAACCACGAAAGCAATCCCGATATAATGCTTCTAGCGGCCAGGGCACTAACCCATCTGTGTGATGTCCTGCCTTCATCATGTGCTGCTGTCGTTCATTATGGTGCTGTTTCCTGCTTCTGTGCGAGATTGCTAACTATAGAATACATGGACTTAGCTGAACAGTCACTGCAAGCTTTGAAGAAGATATCCCAGGAACACCCTACTGCCTGCCTGCGTGCTGGTGCTCTTATGGCTGTGCTTTCATATTTAGATTTCTTCTCCACAGGAGTTCAGCGAGTCGCATTGTCAACTGCTGCTAACATGTGCAAGAAGCTTCCTTCAGATGCGGCCGACTTTGTGATGGAATCTGTTCCCTTGCTAACCAACCTTCTTCAGTATCATGATGCAAAGGTGTTGGAGCATGCTTCTGTTTGTTTGACTCGTATTGCCGAGGCCTTTGCATCATCTCCTGATAAATTAGATGAACTATGTAATCATGGACTTGTTACGCAAGCTGCCTCACTTATTTCCACTAGTAGTACCGGAGGTGGACAGTCAAGTCTCAGCTCAGCTACTTATACTGGATTAATCCGACTTCTTTCCACTTGTGCAAGTGGGTCTGCCTTAGGTGCAAAAACTTTGCTGCTTCTTGGGATCAGTGGGATTCTTAAAGATATATTGTCTGGTTCTGGTGTGTCTACCAATTCGCCTGCATTAAATAGACCACAAGAGCAGATTTTTGAGATAGTCAACTTGGCAAATGAGCTTCTACCCCCTCTGCCTCAAGGAACCATTACTTTTCCGCCCAACTTTAATTCGTTTGTGAAAGGACCTGTCGTCAAGAACCCTTCTACTAGTGGTTCTGTGAAAGATGAAGATCCAACTGATGGTGCCCCTGAGGTTTCAGCTCGTGAGAAACTCTTAAAGGATCAGCCCGAGCTCCTACATCAGTTTGGAATGGATCTCCTTCCTATTTTAATACAGATCTATGGGTCCAGTGTGAATGGTCCAGTACGTCATAAATGCCTCTCAGGAATTGGAAAATTGATGTATTTCAGCACTCCAGAGATGATACAATCGCTATTGAATGTGACTAATATAGCAAGTTTTCTAGCTGGTGTTTTGGCGTGGAAAGATCCACACATATTGATTCCTGCTCTCCAAATTGCTGAGATTCTTATGGAAAAGCTTCCTGAAACATTTTCCAAGATGTTTCTCCGAGAGGGTGTTGTTTATGCTGTTGACCAGCTTATCTTAGCCGATAACCAAAATTCTGCTTCCCAAGCTGCTTCTGTTGAGAAGAATAATAACTCTGCATCTGGAACTTCATCACGCACTCGACGTTATAGAAGACGCAGTGGAAATATGAATCCAGATGGAAGTTCACTGGATGAAAACAAGAATCCTGTTTCTGGTAGTGGTGTTCCACAGGGTTCAGTGGAGGCTCCATCAGTTAATTCTAATCTCCGAACTGCTGTGAGTGCCTATGCCAATGCTTTTAAAACCAAGTACTTCCCTTTAGATCCGGGAGATGTTGAAGTTGGAGTTACGGATGATCTCTTACGTCTGAAAAATCTGTGTGTCAAGTTGAGTACTGGTATTGATGATCAGGAGACTAAATCAAAAGGGAAGTCAAAAGCTTCAGGGTCTCGCCAAGATGATATTATTACTAATAAGGAAGAGTGTTTAACTGGTGTAATATCTGAAATGCTAATTGAATTGGGAAAAGATGATGGTGTTTCCACTTTTGAATTTATTGGTAGTGGCGTTGTTGGAGTTCTGCTTAACTACTTTTCTTGTGGATACTTCTCTAAAGGAAGAATTTCGGAAGCTGAGTTGCCCAAGCTTCGGCGACAAGTACTTAAAAGATTTAAATCATTTATTTCTGTTGCCCTTCCTACAAGCTTTAATGTGGGGACAGTAGCTCCTATGACAGTCTTAGTTCAAAAGCTACAGAGTGCTTTGTCCTCTTTGGAGCGTTTTCCCGTTGTCTTGAGCCATTCTTCTAGATCATCCAATGGTAGTGCACGTCTTTCCTCTGGGCTAAGTGTATTATCTCAGCCATTTAAGTTACGACTTTGTCGAGCCCAAGGAGAAAAATCACTTCGTGATTATTCATCAAATATTGTTCTGATTGATCCATTGGCAAGTTTAGCAGCTGTCGAAGAGTTTCTGTGGCCTAGAGTTCAGAGAAGTGAATCTGGTCAAAAACCTTCAGCATCATCTGCTGCAAACTCAGATTCAGGAACAACCCCTACAGGAACTGTTGCTTCAACTCCTAGTTCAACCACTCGCCGTTACCCTACTAGGCATAGATGGTCGATGACTATTGGAGAAAGAGCAGGGAAGGAATCTTCACAGGAGAAAAGCACTTCAAAGGGGAAGGGGAAAGCTATTCTAAAGCCTGCTTGGGAGGAGAAGAGAGGCCTACAAACTAGAAATTCTACCCGTAGAAGATCAGCTGTGAACAAGGATGCCCAAATGAAGCCTGCAAATGGAGAGACCACTTCTGAGGATGAAGAATTGGACCTGTCCTCCATCCAGATTGATGATTCTTTAGTGATTGAGGATGATGATATTTCTGATGATGAAGATGATGACCAAGATGATGTGCTGCAGGAAGACTCTCTTCCTGTTTGTATGCCTGAAAAGGTGCATGATGTCAAATTGGGTGACGCAGTTGAAGATGGTGATGCTGGTCCAGCTACAAGTGATAGCCAGATTCATTCAGCTTTTGGCTCTGGCAGTAGAGCGGCTGCAGTCAGGGGTTCAAGGGGAGGTATGTCATTTGCTGCTGCTGCTATGGCTGGGCTTGGATCAGCTAATGGCAGGGCTTTCCATGGAAGTCGGGATCAACAGGGATGTCCTCTCTTTGGTGGCTCCAATGATGACCCTAAATTAGTCTTTTCTTCTGGTGAGAAGCAGCTTGATAGACATTTGACAATATACCAAGCTGTTCAACGGCAGCTTGTATTGAACGAGGATGATGATGAGAGGTTTGCTGGTACTGGCAGTGACTTTGTATCTAATGATGGGAGCGGTTTATGGGGTGATATATATACCATCACATATCAGAGGTCAGATAATCAATGCGAGAGGGCTTTAGCTGGGGAATCAAGCTCCTCTAAATCTAAATCTACCAAATGTGTATCAACTTCCAGTTCAAATTCAGAGTCTCAGTTCCATCAAATGTCACTTCTAGACAGTATTTTACAAGGAAAACTTCCATGTGATTTGGACAAATCTAATCCTACATATGATATATTATCTTTACTGCGTGTACTTGAGGGATTGAATCAGCTTGCTCCACGCTTAAGAGCACAAATAGTCTCTGATTATTTTGCAGAGGGAAAGATCTCTACACTTAATGAGTTGAGTGGAATTGGTGGAAAGGTTCCTCATGAGGAATTCATCAATAGTAAGCTTACTCCTAAATTGGCTCGACAAATTCAGGATGCTCTTGCATTATGCAGTGGGAGCCTCCCTTCGTGGTGTTACCAATTGACTAAAGCATGTCCATTCTTGTTTCCTTTTGAGACCCGGCGACAGTATTTCTATTCAACTGCATTTGGGCTGTCACGTGCATTATATCGGCTACATCAGCAACAAGGAGCTGATGGTCAAGGAACAGCAAATGAGCGAGAGGTAAGGGTTGGAAGATTGCAGCGCCAAAAAGTTCGTGTCTCACGTAATCGAATATTGGATTCTGCTGCAAAAGTTATGGAGATGTATTCTAGCCAAAAGGCCGTCCTTGAAGTAGAATATTTTGGCGAAGTGGGAACTGGATTAGGTCCTACCCTTGAATTCTACACACTTTTAAGTCATGAGTTGCAGAGGGCTGGACTTGGGATGTGGAGGTCTAATTCTTTACAAGAGTCGATCGAAAGTAGTGAAGATGAACAGCTTGGAAAGGCTAAAGATGCCAATACTGATATCATCCAATCTCCTCTTGGGTTATTCCCACGACCTTGGCCACCAAATGCCAATTCTTCCGAGGGCAGCCAATTTTCGAAGGTTATTGAATATTTCCGACTTGTTGGTCGTGCCATGGCCAAAGGTCTGCAAGATGGAAGACTATTGGATCTACCACTATCAACAGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTACATGATGTCCTCTCATTTGACGCTGAGCTAGGGAAGAATTTACAAGAATTGCAGGCTCTTGTTCATCGGAAACATCTTTTAGAATCGACCAACGGTGATAATGAAAATACAATTTCCAACTTGTCTTTCCGCGGGGTTGCAGTAGAAGATCTCTCCTTGGATTTTACACTACCTGGTTATCCGGACTATGTTTTGAAGCCAGGAGACGAAACTGTTAATATTCACAACTTGGAGGAGTACATATCCCTTGTACTAGATGCCACTGTTAAGACTGGCATAATGCGACAAATGGAAGCATTTACCGCAGGATTCAATCAGGTTTTTGACATATCGGCATTACGCATATTTATTCCCCACGAGTTGGACCATTTGCTATGTGGTCGTAGAGAATTGTGGAAGGCTGACACTCTTGCCGATCATATTAAATTCGATCATGGATACACCGCCAAGAGTCCTGCAATAGTCAATTTTCTCGAGATTATGGGCGAATTCACACCAGAGCAGCAGCGAGCTTTCTGCCAGTTTGTAACAGGTGCACCTAGGCTTCCACCAGGAGGCCTTGCAGTGTTGAACCCAAAATTGACTATTGTGAGAAAGCACTCGTCAACAACAACTAATGCAGCCACCAGCGGGGTAGGGGCTTCCGAATCGGCAGATGATGATTTGCCTAGTGTCATGACATGCGCCAATTACCTTAAGCTTCCTCCGTACTCAACCAAGGGGGAGGAGCAATGGTATGATGAGAGTGGTGGGGAAAACAAGGAACTGTTGGATTCCCTCTTCACCTGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGACGAGCAAGAGCCGCAAGCTATGGCCAACGACGATGGCGATCTCGATCTTCTCCTTTACTCTTCAAGATAAAGTTGTTGAAACTCCTCCTCGAACATCTGCTTCCTTCCTCAGCAATACTGATAAAGTGACCACCAATGCACGCTCACAGGGGAAAAGATTCCTTGCTGAGATCTTAGGGAAATTGAGTAATAAAAGAGTAAATAATAAATCAGCCAAACCAAGTCGGGAGTATCAGTTCAGGGAAGACGACAATTTTGTAAGATTCTATCCAGCACTTTGTTGTTTTCTGTTGCCATCTTTCTACGCCATTACAGATCTAAATCAAAGCAAGAGAAGCGAGAACAGACGTGGAATTGATTCCTGGACTACTGGAGAAACAATAGAAAGCTTCGTGCAGACGGCTGAGCACAAAGCCAATTGTCAAGTGACACGAGAGGGCACTCCCAAGGAGGAAATGAGTGTTTCCAGGTTTATTAAGTGTGTTACTGTTGGCGATGGTGCTGTTGGGAAGACTTGTATGCTTATCTCCTACACCAGCAACACTTTCCCCACCGATTACGTGCCGACCGTTTTCGACAATTTTAGTGCAAATGTAGTTGTGGATGGCAGTACAGTCAACCTGGGCTTGTGGGATACTGCTGGCCAGGAAGATTACAATAGGTTGAGACCGTTGAGCTACCGTGGAGCCGATGTATTTCTCTTAGCGTTCTCGCTCATAAGCAAGGCTAGCTATGAAAATGTGGCCAAGAAATGGATTCCTGAACTGAGGCACTATGCTCCTGGCGTACCAGTTATTCTTGTTGGGACTAAGCTTGACCTTCGAGAAGATAAACAGTACCTGATCGAACACCCCGGGGTAGTCCCCATTACCACGTCCCAGGGGGAGGAACTCAGAAAACTAATCGGTGCCCCAGTTTACATCGAATGCAGTTCGAAAACACAGCAAAATGTGAAAGCCGTGTTCGATGCAGCGATCAAAGTGGTTCTCCAGCCTCCAAAGCGGAAGAAGCGAAAGAAGCGAAAGGCACAGAAGTCGTGTTCTATATTATGA 6675 44.67 METRSRKRAEASSAAPSSSSSGPTTRSSKRARLSGTSSLNLAASTLSISKRSRSTRTQEPSATSTPMDSTNESSGSRRRGKNSDKENSDKGKEKEHEVRIGDREKNAEQSFGLNIEGSGGGEDDDNDSEGGMGVLQHNLSTASSALQGLLRKLGAGLDDLLPSSAIASASFSQQRGRLKKILSGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMESVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSTGGGQSSLSSATYTGLIRLLSTCASGSALGAKTLLLLGISGILKDILSGSGVSTNSPALNRPQEQIFEIVNLANELLPPLPQGTITFPPNFNSFVKGPVVKNPSTSGSVKDEDPTDGAPEVSAREKLLKDQPELLHQFGMDLLPILIQIYGSSVNGPVRHKCLSGIGKLMYFSTPEMIQSLLNVTNIASFLAGVLAWKDPHILIPALQIAEILMEKLPETFSKMFLREGVVYAVDQLILADNQNSASQAASVEKNNNSASGTSSRTRRYRRRSGNMNPDGSSLDENKNPVSGSGVPQGSVEAPSVNSNLRTAVSAYANAFKTKYFPLDPGDVEVGVTDDLLRLKNLCVKLSTGIDDQETKSKGKSKASGSRQDDIITNKEECLTGVISEMLIELGKDDGVSTFEFIGSGVVGVLLNYFSCGYFSKGRISEAELPKLRRQVLKRFKSFISVALPTSFNVGTVAPMTVLVQKLQSALSSLERFPVVLSHSSRSSNGSARLSSGLSVLSQPFKLRLCRAQGEKSLRDYSSNIVLIDPLASLAAVEEFLWPRVQRSESGQKPSASSAANSDSGTTPTGTVASTPSSTTRRYPTRHRWSMTIGERAGKESSQEKSTSKGKGKAILKPAWEEKRGLQTRNSTRRRSAVNKDAQMKPANGETTSEDEELDLSSIQIDDSLVIEDDDISDDEDDDQDDVLQEDSLPVCMPEKVHDVKLGDAVEDGDAGPATSDSQIHSAFGSGSRAAAVRGSRGGMSFAAAAMAGLGSANGRAFHGSRDQQGCPLFGGSNDDPKLVFSSGEKQLDRHLTIYQAVQRQLVLNEDDDERFAGTGSDFVSNDGSGLWGDIYTITYQRSDNQCERALAGESSSSKSKSTKCVSTSSSNSESQFHQMSLLDSILQGKLPCDLDKSNPTYDILSLLRVLEGLNQLAPRLRAQIVSDYFAEGKISTLNELSGIGGKVPHEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLHQQQGADGQGTANEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQRAGLGMWRSNSLQESIESSEDEQLGKAKDANTDIIQSPLGLFPRPWPPNANSSEGSQFSKVIEYFRLVGRAMAKGLQDGRLLDLPLSTAFYKLVLGQDLDLHDVLSFDAELGKNLQELQALVHRKHLLESTNGDNENTISNLSFRGVAVEDLSLDFTLPGYPDYVLKPGDETVNIHNLEEYISLVLDATVKTGIMRQMEAFTAGFNQVFDISALRIFIPHELDHLLCGRRELWKADTLADHIKFDHGYTAKSPAIVNFLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTTTNAATSGVGASESADDDLPSVMTCANYLKLPPYSTKGEEQWYDESGGENKELLDSLFTWVVVVVVVVVVTSKSRKLWPTTMAISIFSFTLQDKVVETPPRTSASFLSNTDKVTTNARSQGKRFLAEILGKLSNKRVNNKSAKPSREYQFREDDNFVRFYPALCCFLLPSFYAITDLNQSKRSENRRGIDSWTTGETIESFVQTAEHKANCQVTREGTPKEEMSVSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPVILVGTKLDLREDKQYLIEHPGVVPITTSQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKRKKRKKRKAQKSCSIL 2224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1147855 1169131 + CmaCh02G002570.1 Cma02g00257 288008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00257 2224 Gene3D Hect, E3 ligase catalytic domain 1733 1845 - -
Cma02g00257 2224 Gene3D Hect, E3 ligase catalytic domains 1386 1626 - -
Cma02g00257 2224 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 47 1841 - -
Cma02g00257 2224 CDD Rop_like 2032 2204 - -
Cma02g00257 2224 Gene3D - 2024 2224 IPR027417 -
Cma02g00257 2224 SMART rab_sub_5 2033 2206 - -
Cma02g00257 2224 MobiDBLite consensus disorder prediction 651 706 - -
Cma02g00257 2224 MobiDBLite consensus disorder prediction 10 73 - -
Cma02g00257 2224 MobiDBLite consensus disorder prediction 651 666 - -
Cma02g00257 2224 MobiDBLite consensus disorder prediction 994 1046 - -
Cma02g00257 2224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 47 1841 IPR045322 GO:0006511|GO:0061630
Cma02g00257 2224 Pfam HECT-domain (ubiquitin-transferase) 1493 1841 IPR000569 GO:0004842
Cma02g00257 2224 Gene3D - 179 657 IPR011989 -
Cma02g00257 2224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2032 2204 IPR027417 -
Cma02g00257 2224 SMART hect_3 1457 1858 IPR000569 GO:0004842
Cma02g00257 2224 Pfam Ras family 2034 2204 IPR001806 GO:0003924|GO:0005525
Cma02g00257 2224 SMART arm_5 209 250 IPR000225 GO:0005515
Cma02g00257 2224 SMART arm_5 335 373 IPR000225 GO:0005515
Cma02g00257 2224 SMART arm_5 292 332 IPR000225 GO:0005515
Cma02g00257 2224 ProSiteProfiles small GTPase Ras family profile. 2028 2224 IPR001806 GO:0003924|GO:0005525
Cma02g00257 2224 MobiDBLite consensus disorder prediction 74 106 - -
Cma02g00257 2224 PRINTS Transforming protein P21 ras signature 2056 2072 - -
Cma02g00257 2224 PRINTS Transforming protein P21 ras signature 2135 2148 - -
Cma02g00257 2224 PRINTS Transforming protein P21 ras signature 2033 2054 - -
Cma02g00257 2224 PRINTS Transforming protein P21 ras signature 2181 2203 - -
Cma02g00257 2224 PRINTS Transforming protein P21 ras signature 2073 2095 - -
Cma02g00257 2224 ProSiteProfiles small GTPase Rab1 family profile. 2024 2224 - -
Cma02g00257 2224 MobiDBLite consensus disorder prediction 1 134 - -
Cma02g00257 2224 MobiDBLite consensus disorder prediction 1257 1278 - -
Cma02g00257 2224 MobiDBLite consensus disorder prediction 954 992 - -
Cma02g00257 2224 SMART rho_sub_3 2035 2206 IPR001806 GO:0003924|GO:0005525
Cma02g00257 2224 MobiDBLite consensus disorder prediction 677 706 - -
Cma02g00257 2224 TIGRFAM small_GTP: small GTP-binding protein domain 2033 2197 IPR005225 GO:0005525
Cma02g00257 2224 MobiDBLite consensus disorder prediction 1059 1092 - -
Cma02g00257 2224 ProSiteProfiles HECT domain profile. 1470 1841 IPR000569 GO:0004842
Cma02g00257 2224 ProSiteProfiles small GTPase Rho family profile. 2026 2203 - -
Cma02g00257 2224 SMART ras_sub_4 2030 2206 - -
Cma02g00257 2224 MobiDBLite consensus disorder prediction 954 1092 - -
Cma02g00257 2224 SUPERFAMILY ARM repeat 177 643 IPR016024 -
Cma02g00257 2224 SUPERFAMILY Hect, E3 ligase catalytic domain 1438 1841 IPR035983 GO:0004842
Cma02g00257 2224 CDD HECTc 1446 1841 IPR000569 GO:0004842
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00257 K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] - csv:101218793 3069.64
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00257 Cma20g00754 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00257 Cma-Chr2:1147855 Cma11g00107 Cma-Chr11:573877 7.22E-111 dispersed
Cma05g00318 Cma-Chr5:1381482 Cma02g00257 Cma-Chr2:1147855 3.91E-98 dispersed
Cma06g01192 Cma-Chr6:7987103 Cma02g00257 Cma-Chr2:1147855 2.70E-07 dispersed
Cma12g00399 Cma-Chr12:2056290 Cma02g00257 Cma-Chr2:1147855 1.37E-101 dispersed
Cma12g01260 Cma-Chr12:9821502 Cma02g00257 Cma-Chr2:1147855 7.42E-97 dispersed
Cma06g00124 Cma-Chr6:645546 Cma02g00257 Cma-Chr2:1147855 7.87E-113 transposed
Cma06g00351 Cma-Chr6:1629196 Cma02g00257 Cma-Chr2:1147855 3.17E-122 transposed
Cma07g00208 Cma-Chr7:961086 Cma02g00257 Cma-Chr2:1147855 7.50E-111 transposed
Cma20g00754 Cma-Chr20:3535112 Cma02g00257 Cma-Chr2:1147855 0 transposed
Cma02g00257 Cma-Chr2:1147855 Cma20g00753 Cma-Chr20:3526391 8.80E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00257 Cma_Chr02 FPKM 22.948669 25.200794 21.473627 21.284782 34.91547 37.139832 34.08564 20.843271 19.192095 20.323082