Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00258 ATGACAATTGACCAGGAGGATTATGAGGTTATTGAAAAGAAGAAGAGGAAGAAGAAGGAGAGGAAGAATGTGTTAGTGGGGATTAGAATTAATGGCGATAGTAGAGACGTACTCAATTGGGCGATTGTTAAAGTTGCTGATCCTGGGGATTGTGTCATTGTAATCCATGTTTGTCAAACTTCTGATCGTGTATCAAAAGATAAGCCCATATTTGATGAATTCTTAGAAGGATACAAAAGCCTTTGTGATGTAAACAAGGTAGCTCTTATTGCTCAGATATCGACCGGAAGTTCGGTTAGGAAGACTCTGGTCAGACAGGCAAAAGGCTATGCTGCTGAGGCTGTAGTTTTGGGAACAAGCAAGCCATTTAATCTTGGGGTATGGTCTTCAACAACTAGATACTTAGTCAAGCGACTGCCTCGAACCACCGATGTTTTGGCTCTCAACAATGGAAAAATTGTCTTCAGAAGATCCACCAATGATCAACTACCAGGCTTGAATCATGACCCAAAACCAAGTTTTAGTCAAGCTAGTCAATCTGATTTTGATGCCTCTGAGACTGAGACTTCTGCTTCTTATAGTATTGGTAGTGAAGACTTGAAGGATGAACATCATGGAGGCATCCTTGAAAGTAAAAGAAATAGTAACAAAAAAGACACATCAATGAAGATTGACCATCCCGAGCTAGGGCTCGGTTGGCCACTGCTTCGAACGATGCCAAAGATTTCACAAAACTCATGTGTACATAACATGTCTGTAGTGCAATGGGTGATGAACTTACCCGATCGCTCACCGAGTCATTTAAGCACAAAAGAAAAAAATGATCCATCAAGAAGTGAGCCAGGGCTTGGAATTTTATCCGACTTTTCTGAACCACCAGAAGACTTGGAGGATATCCTGAAAACTAAGTCATCTTCTTATAAATGGTTTAGTCCTGATGTGTTGAAAGCGTCAACTTCTCATTTCTCTTCAGAAAACCTGATTGGGAAAGGCGGTTGCAATCATGTATACAAAGGAATTCTCCCAGATGGAAAGCCAATTGCAGTTAAAGTAATGAACTCTTCCAAACAGGCATGGAATGAATTTTCTCAAGAAATTGATATTATTTCCTCATTACATCACAAGAACATAACTCCGTTTCTCGGTATCTGCGTAGATGACGATATGTTGATATCTGTTTATGGTTTCTTTTCTCAAGGAAGTTTAGAGGAAAATCTATCTGATACAAAGCAAGAAAAAGGCATTCTTTCATGGGAGGTGAGATTTAAGCTGGCTATCGGTATTGCCGAGGCGCTAAGCTACCTACACGACGAATATCCTCGGCCTGTTGTACACAGAGATGTCAAATCATCAAACATTCTGCTCACTGATGAACTTGAACCACAGCTATCGGATTTTGGCCTTGCAATCTGGGGACCAACAGAATCATCGTTTCAGATCGAAGCCAACGTCGTCGGAACGTTTGGATATCTTGCTCCTGAATATTTCATGTATGGAAAGATGAGTAATAAGATTGATGTGTACGCTTTCGGTATAGTTCTACTCGAACTGTTATCGGGACGAAGAGCAATCAGTGCAGAGACTTGGAAAGAGCAAAAGAGCTTGGTTATGTGGGCCAAGCCAATCATAGAGAGTGGCAGCATAAATGAACTAGTCGATCCAAATTTGGTGCGAAAATTCGACGTCGATCAGTTGCAAAGAATGGCTCTTGCAGCAAATCTGTGCATCACGAGGGCGTCTCGACTCCGTCCTAGAATTAGTCAGATACTGAAGATTCTAAGAGGGGAAATCAATTCCATGAATGTAAGTATGGAGGAATCACAAAGTGTCGAGAATGGAGACGATGAAGTTTATCCAAACTCGAGCTCTGATCTGCATTTGATGAACCTTGCATTGCTTGGTGACGACGACTACGACGATGGAGCAGAATTGGGTGCCTTTGGGCAAGCCCTATGGTGA 1959 41.7 MTIDQEDYEVIEKKKRKKKERKNVLVGIRINGDSRDVLNWAIVKVADPGDCVIVIHVCQTSDRVSKDKPIFDEFLEGYKSLCDVNKVALIAQISTGSSVRKTLVRQAKGYAAEAVVLGTSKPFNLGVWSSTTRYLVKRLPRTTDVLALNNGKIVFRRSTNDQLPGLNHDPKPSFSQASQSDFDASETETSASYSIGSEDLKDEHHGGILESKRNSNKKDTSMKIDHPELGLGWPLLRTMPKISQNSCVHNMSVVQWVMNLPDRSPSHLSTKEKNDPSRSEPGLGILSDFSEPPEDLEDILKTKSSSYKWFSPDVLKASTSHFSSENLIGKGGCNHVYKGILPDGKPIAVKVMNSSKQAWNEFSQEIDIISSLHHKNITPFLGICVDDDMLISVYGFFSQGSLEENLSDTKQEKGILSWEVRFKLAIGIAEALSYLHDEYPRPVVHRDVKSSNILLTDELEPQLSDFGLAIWGPTESSFQIEANVVGTFGYLAPEYFMYGKMSNKIDVYAFGIVLLELLSGRRAISAETWKEQKSLVMWAKPIIESGSINELVDPNLVRKFDVDQLQRMALAANLCITRASRLRPRISQILKILRGEINSMNVSMEESQSVENGDDEVYPNSSSDLHLMNLALLGDDDYDDGAELGAFGQALW 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1171159 1175603 + CmaCh02G002580.1 Cma02g00258 288009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00258 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Cma02g00258 652 MobiDBLite consensus disorder prediction 159 224 - -
Cma02g00258 652 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 20 642 - -
Cma02g00258 652 SMART serkin_6 322 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00258 652 Gene3D Phosphorylase Kinase; domain 1 293 396 - -
Cma02g00258 652 MobiDBLite consensus disorder prediction 264 292 - -
Cma02g00258 652 Gene3D HUPs 4 146 IPR014729 -
Cma02g00258 652 Gene3D Transferase(Phosphotransferase) domain 1 397 618 - -
Cma02g00258 652 PANTHER OS08G0249100 PROTEIN 20 642 - -
Cma02g00258 652 CDD USP_Like 23 146 - -
Cma02g00258 652 Pfam Protein kinase domain 323 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00258 652 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 22 141 - -
Cma02g00258 652 MobiDBLite consensus disorder prediction 197 224 - -
Cma02g00258 652 SUPERFAMILY Protein kinase-like (PK-like) 303 593 IPR011009 -
Cma02g00258 652 MobiDBLite consensus disorder prediction 159 196 - -
Cma02g00258 652 ProSiteProfiles Protein kinase domain profile. 322 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00258 - - - csv:101206547 978.008
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00258 Cma20g00752 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00258 Cma-Chr2:1171159 Cma04g02392 Cma-Chr4:16570754 1.27E-147 dispersed
Cma02g00258 Cma-Chr2:1171159 Cma20g00752 Cma-Chr20:3523383 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g160 . Blo15g00380 Bda06g00477 Bda08g00992 Bpe07g00715 . Bma05g00367 Bma12g00919 . . Cma02g00258 Cma20g00752 . Car20g00653 . . . . . . . . . . . . . . . . . . . . . Lsi10g00758 . Chy11g00254 . . . . . . Bpe05g00289 . . . Cmo02g00255 Cmo20g00747 . . . . Cpe16g00317 Cpe05g01372 Bhi10g01849 . . . . . . Cla02g01167 . . . . . . . Csa02g01393 . Cme11g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005074 2 4 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 1 1 1 0 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68318 PF00069 Pkinase 3.60E-39 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00258 Cma_Chr02 FPKM 0.723412 0.94146 1.002187 1.007304 1.744356 2.099925 1.639212 0.531066 0.499436 0.610519