Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma02g00259 | ATGGAAGACGGCGAGCTTGAATCCTCGAATCCTGAAGTGTTTTCGAGTTCGAATGCCGTTGAGTTTCTGAGTAGCTGCTCGATGGATAGCTTCTTCGATGAGATTCTTAAGGATACTCATGCTTGCACGCATGCTCATACTTGCAACCCTCCTGGTCCTGATTATTCACATACGCACACATGTTTTCATGTTCATACTAAAATTGTTTCCTCCCCCACCGAAGAAAAGGTTTCCACAGATGACACGGCGGAATCTGTGGATAAGAAGACTAAGAAACGCCCGCTTGGTAATCGCGAAGCGGTTCGTAAATACCGTGAGAAGAAGAAGGCAAGAGCTGCATCATTGGAAGATGAAGTTGTGAGATTGAGGAGCCTGAATCAGCAACTTTTGAAGAGATTGCAAGGTCAGGCTGCATTGGAGGCTGAGATTTCGAGGCTCAAATGTTTGCTTGTGGATATTAGAGGAAGAATTGAAGGGGAGATTGGAACATTTCCTTATCAGAAACCAGCCAATTCAGATCTTCCCAATCAAAATATGTCTGGTAGTTACATGATAAATCCCTGTAACGTGCAGTGCAATGATCTGCCGTATTGCCTTCATCCAGGGGCCGATGGAAAAAGTGGAGAGAGCGTTTTGTTGAATGGGCAAAGCTTCAGTGGCTGTGACTTTGAAAATCTTCAGTGCTCGGCTAATCAAAACACCGGAGGAACAAAGGAACTTCCTGATTGTGGATTAGGGGACACAGTTTCTAACATCAATTGCGCCGAATTTAATCAGAAGAAAGGTGTCTATGAAAGAATCTGTCCAAGTTATGTGTTATAA | 822 | 43.92 | MEDGELESSNPEVFSSSNAVEFLSSCSMDSFFDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKIVSSPTEEKVSTDDTAESVDKKTKKRPLGNREAVRKYREKKKARAASLEDEVVRLRSLNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGTFPYQKPANSDLPNQNMSGSYMINPCNVQCNDLPYCLHPGADGKSGESVLLNGQSFSGCDFENLQCSANQNTGGTKELPDCGLGDTVSNINCAEFNQKKGVYERICPSYVL | 273 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 1176817 | 1178775 | + | CmaCh02G002590.1 | Cma02g00259 | 288010 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma02g00259 | 273 | Coils | Coil | 98 | 132 | - | - | |
| Cma02g00259 | 273 | PANTHER | BASIC LEUCINE ZIPPER 23 | 1 | 240 | - | - | |
| Cma02g00259 | 273 | MobiDBLite | consensus disorder prediction | 72 | 98 | - | - | |
| Cma02g00259 | 273 | CDD | bZIP | 90 | 144 | - | - | |
| Cma02g00259 | 273 | PANTHER | CCAAT/ENHANCER BINDING PROTEIN | 1 | 240 | - | - | |
| Cma02g00259 | 273 | Gene3D | - | 75 | 153 | - | - | |
| Cma02g00259 | 273 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 87 | 134 | IPR004827 | GO:0003700|GO:0006355 | |
| Cma02g00259 | 273 | SUPERFAMILY | Leucine zipper domain | 89 | 134 | IPR046347 | GO:0003700|GO:0006355 | |
| Cma02g00259 | 273 | MobiDBLite | consensus disorder prediction | 77 | 98 | - | - | |
| Cma02g00259 | 273 | SMART | brlzneu | 84 | 152 | IPR004827 | GO:0003700|GO:0006355 | |
| Cma02g00259 | 273 | Pfam | Basic region leucine zipper | 87 | 142 | IPR004827 | GO:0003700|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma02g00259 | Cma11g01382 | CCT | |
| Cma02g00259 | Cma19g00738 | CCT | |
| Cma02g00259 | Cma20g00750 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma11g01382 | Cma-Chr11:9117381 | Cma02g00259 | Cma-Chr2:1176817 | 2.21E-129 | wgd | |
| Cma19g00738 | Cma-Chr19:7389350 | Cma02g00259 | Cma-Chr2:1176817 | 1.38E-136 | wgd | |
| Cma02g00259 | Cma-Chr2:1176817 | Cma20g00750 | Cma-Chr20:3517913 | 8.73E-159 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34428 | PF07716 | bZIP_2 | 3.00E-15 | CL0018 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma02g00259 | K25785 | - | csv:101219501 | 477.248 |