Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00267 ATGCAGTTCATGAGCTCATTTTTGTCTGCCTCCGAGCAGCCTCAGATGGGGCAACAGGATTCTGTGGACAAGGAGTCTCTTACGGATACTTGCGATAGTTACATGAATAGGGATGGTGTTTCTACAAGTGGAAATATTCACATGCCAACTATAAATAATGATGAAGCTAGAAGAATGAATGAGAATAAAAGCGATAAACATAATGTTCCACATGTATATAGACGAGATATTGTAAAAAGCAAAGGCAGTGGTATGATAGGGATTGTGACTGAAGTTGCTGGTGATGCTGATTCAGATACTGACATTACTGATGATGAAGATGACTATGATGATGGTGAGGATGGTCTTGATGATGATGGTTGTGATGATTATGGGGAGAACGAAGGTCAAAACAAGGAAAACTATGACGATGACACTAATGCTAAAAATTCAAACAGAGATAGTTATAAGAATCAACCCCTTACTGCTGATGAAGTTCGAGTCCTCTGGATGGATGAAAGTGAGACTACTCAGAATGTTAATGATTTAACAGTTATAGATAGGGGTTTTTTACATGGTGATTTTGTTGCTGCTGTTTCCAATCCTACAGGGCAAGCAGGTGTTGTGGTAGATGTAAATATCTCTGTTGACTTGTTAGTTCCTGATGGATCAGTTGTGAAAAATATATCATCTAAGGACTTGATACGTGTGAGAGATTTCACGGTGGGGGATTATGTGGTCCTTGGTCCGTGGTTGGGTAGAATTGATGATATCTTGGATAATGTGACTGTGATGTTTGATGATGGCTCCAAGTGTAAAGTCACAAAGGCAGAGCCATCGCGGCTCAAACCAGTTTCTAAGAATATCCTTGAAGATGCAAGCTTTCCTTACTATCCTGGCCAGCGGGTGAGGGCGAGTTCTTCAACAGTTTTTAAGAATTCTAAATGGCTTTCTGGTTTATGGAAACCTAATCGATTGCAAGGTACTGTCACTAAAGTTACAGTTGGATCAGTGTTCATTTATTGGATAGCATCTGCTGGATATGGACCAGATTCTTCTACCACCCCAGCTGAAGAACAGAGTCCAAAGAACTTGAGACTATTAACTTGTTTTTCACATGTGAATTGGCAATTGGGTGACTGGTGTCTTCTTCCCTCCTCATTCTCCTCTGGCTCGACTAAGGACTCATCACAAACAGAACTTTCTGATTCAGTGACCAATACGTTAGATTACGCACAAACAGTGGGAGCATGCGATTCAGAGGATACTGTGCTAGATGAATTAAATGGGAGAACTGAATCCACTGATCTTGACTCCATTAGTGCATGTAATGGAAATTATAGGGATCCAGAATGTCATATTTTGCCGGAATCTAGTAGTTCTAGAGCAACAAAGGAGAATACCCATGAGACTTGGCCTCTACATCGCAAAAAAATTCGTAAAGTTGTCATCAGGAGAGATAAGAAGGCTAGAAAGAAAGATGACAATTTTGAGAGGGCCCTTTTAATCATCAATACTTCGACAAAAGTTGATGTTGTATGGCAGGATGGCCGGACAGAACTTGCGCTGGATTCAACTGGCTTGATTCCAATTAATCCAGGTGATCATGAATTTGTTCCAGAACAGTATGTGGTTGAGAAGGCCTCTGATAATGATGATGATGTTACAGAAAGCAGGCGAGTTGGAGTTGTGAAAAGTGTTCATGCAAATGAGCGAACAGCCTGTGTAAGGTGGTTAAAACCAGTCTCCAGGGCAGAGGATCCTCGAGAATTTGACATAGAAGAAGTTGTTAGTGTGTATGAGCTAGAAGGGCATCCAGATTATGACTACTGTTATGGTGATGTTGTTGTTCGTTTGTCACCTGTTTCTGATTCTATAGAAGCTCTGTCTTCTGAAAACAATACTGAAGAATTAAATCATCAAAGTTCAACCAATGGGGTGATGAGTTGTACAGAAAAGGTTTCAGGAAGCCTGAAAATAGAATATCCATCAAGTAGTGATGATTTCTTTGACTTCTCAGATCTCTCTTGGGTTGGAAATATAACGAATCTTAAGAATGGTGATATTGAAGTTTTTTGGGCCAATGGCATGGTTTCAACGGTTGGCCCTCAAGCAATTTATGTTGTTGGTCGAGATGATGATGATGAATCAATTGGTGCTGGAAGTGAAATAAGTAACGGTGCTGCAAGTTGGGAAACAATTGATGATGATGATGATGATGATGAAATGGATGTTGAGAACGCCAAGGAGGATATTGAGCTGCAAGATACTGGAGTGGATTCTGAAGAGGAAGAGAGTGAACAGCATAATTCAGGAAGAAGTCTAGCTCTTTCTGTTCCACTTGCTGCGTTTCGATTTGTTACCAGATTGGCTACTGGAATATTCTCACGAGGACCAAGAAATCGAGAATCAATGGATTTGGATTCCCACAGTGAAAGTGACACTCAATCCTTGGAAATTCAAGCTTTGGAGGAAATAGATTCTGGGCTTCAGTCTAGCTCTCTTAAATCCAATTCTTTTACTGCTTCTGATATGAACTCTGACTGTGGAAGAGGAGAGGACGATGATGCCTCAGAGCCATCAAAAGTGTTAGTATCAGCAGAAGCTTCAAGCAACCTGAGGACTGCTCAATCAGATGGGTCAACATGCCATGAGGATGGCACCTGCAGCTTCAAGGGCTTTGATATCGCTAAAGATCCTTTGGACCATTATTTTCTTGGTACGAATGGTCAAACTATTAACGGAAGGAAATGGCTTAAGAAAATCCAGCAAGATTGGACTATCCTCCAGAATAATCTTCCAGATGGGATATACGTTCAAGTCTATGAGGATCGAATGGACCTTTTAAGAGCCGTCATTGTTGGGGCCTATGGAACCCCTTACCAAGATGGCCTTTTCTTCTTCGATTTTCACCTCCCACCAGATTATCCCGACGTTCCTCCTTCAGCATATTATCATTCAGGTGGGTGGCGGATAAATCCCAATCTTTATGAGGAAGGCAAAGTGTGCCTTAGCCTTTTAAATACTTGGACTGGCAGAGGAAATGAAGTGTGGGATCCAAAGTCCTCTAGCATCCTTCAAGTGTTGGTATCGCTCCAGGGGTTAGTGTTGAATTCTAAACCATATTTTAATGAAGCGGGATATGACAAACAAATTGGGACAGCAGAAGGAGAGAAGAATTCCTTGTCGTACAATGAAAACACCTTCTTGTTGAACTGCAAGACAATAATGTATCTTATGAGGAAGCCTCCCAAGGACTTTGAAGAACTCGTTAAAGAACATTTCAGGAAGCGTGGATATTACATCCTGAAGGCCTGTGATGCATACATGAAAGGTCACTTAATTGGCTCTCTCACAGAAGATGCCTCTATAAGAGAAGAAAGCGATCCCAACTCCACGTCAGTCGGGTTTAAGCTTATGCTCGCTAAGATTGTTCCGAAGCTGTTCTCGTCGTTGAACGAAGTCAGAGCTGATTGTCGTGATTTTAAGCATTTTCAACAGTTGTAG 3486 41.34 MQFMSSFLSASEQPQMGQQDSVDKESLTDTCDSYMNRDGVSTSGNIHMPTINNDEARRMNENKSDKHNVPHVYRRDIVKSKGSGMIGIVTEVAGDADSDTDITDDEDDYDDGEDGLDDDGCDDYGENEGQNKENYDDDTNAKNSNRDSYKNQPLTADEVRVLWMDESETTQNVNDLTVIDRGFLHGDFVAAVSNPTGQAGVVVDVNISVDLLVPDGSVVKNISSKDLIRVRDFTVGDYVVLGPWLGRIDDILDNVTVMFDDGSKCKVTKAEPSRLKPVSKNILEDASFPYYPGQRVRASSSTVFKNSKWLSGLWKPNRLQGTVTKVTVGSVFIYWIASAGYGPDSSTTPAEEQSPKNLRLLTCFSHVNWQLGDWCLLPSSFSSGSTKDSSQTELSDSVTNTLDYAQTVGACDSEDTVLDELNGRTESTDLDSISACNGNYRDPECHILPESSSSRATKENTHETWPLHRKKIRKVVIRRDKKARKKDDNFERALLIINTSTKVDVVWQDGRTELALDSTGLIPINPGDHEFVPEQYVVEKASDNDDDVTESRRVGVVKSVHANERTACVRWLKPVSRAEDPREFDIEEVVSVYELEGHPDYDYCYGDVVVRLSPVSDSIEALSSENNTEELNHQSSTNGVMSCTEKVSGSLKIEYPSSSDDFFDFSDLSWVGNITNLKNGDIEVFWANGMVSTVGPQAIYVVGRDDDDESIGAGSEISNGAASWETIDDDDDDDEMDVENAKEDIELQDTGVDSEEEESEQHNSGRSLALSVPLAAFRFVTRLATGIFSRGPRNRESMDLDSHSESDTQSLEIQALEEIDSGLQSSSLKSNSFTASDMNSDCGRGEDDDASEPSKVLVSAEASSNLRTAQSDGSTCHEDGTCSFKGFDIAKDPLDHYFLGTNGQTINGRKWLKKIQQDWTILQNNLPDGIYVQVYEDRMDLLRAVIVGAYGTPYQDGLFFFDFHLPPDYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQIGTAEGEKNSLSYNENTFLLNCKTIMYLMRKPPKDFEELVKEHFRKRGYYILKACDAYMKGHLIGSLTEDASIREESDPNSTSVGFKLMLAKIVPKLFSSLNEVRADCRDFKHFQQL 1161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1204022 1213151 - CmaCh02G002670.1 Cma02g00267 288018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00267 1161 MobiDBLite consensus disorder prediction 125 144 - -
Cma02g00267 1161 MobiDBLite consensus disorder prediction 725 742 - -
Cma02g00267 1161 MobiDBLite consensus disorder prediction 710 767 - -
Cma02g00267 1161 MobiDBLite consensus disorder prediction 822 839 - -
Cma02g00267 1161 SMART ubc_7 913 1070 - -
Cma02g00267 1161 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 59 1160 - -
Cma02g00267 1161 MobiDBLite consensus disorder prediction 97 124 - -
Cma02g00267 1161 SUPERFAMILY UBC-like 896 1077 IPR016135 -
Cma02g00267 1161 CDD UBCc 913 1063 IPR000608 -
Cma02g00267 1161 Gene3D Ubiquitin Conjugating Enzyme 879 1146 IPR016135 -
Cma02g00267 1161 MobiDBLite consensus disorder prediction 822 877 - -
Cma02g00267 1161 MobiDBLite consensus disorder prediction 1 24 - -
Cma02g00267 1161 MobiDBLite consensus disorder prediction 1 56 - -
Cma02g00267 1161 MobiDBLite consensus disorder prediction 857 877 - -
Cma02g00267 1161 Pfam Ubiquitin-conjugating enzyme 915 1059 IPR000608 -
Cma02g00267 1161 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 59 1160 - -
Cma02g00267 1161 MobiDBLite consensus disorder prediction 32 50 - -
Cma02g00267 1161 MobiDBLite consensus disorder prediction 96 151 - -
Cma02g00267 1161 Coils Coil 738 758 - -
Cma02g00267 1161 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 910 1093 IPR000608 -
Cma02g00267 1161 MobiDBLite consensus disorder prediction 790 809 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00267 K10581 UBE2O; ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24] - csv:101220698 1870.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00267 Cma20g00742 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00267 Cma-Chr2:1204022 Cma03g01263 Cma-Chr3:8292942 9.77E-56 dispersed
Cma02g00267 Cma-Chr2:1204022 Cma20g00742 Cma-Chr20:3484983 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g177 . . . . . . . . . . Cma02g00267 Cma20g00742 . Car20g00644 . . . . . . . . . . . . . . . . . Cone12ag1239 Cone8ag1294 . . Lsi10g00504 . . . . . . . . . . . . Cmo02g00263 Cmo20g00740 . . . . . Cpe05g01365 Bhi10g01829 . . . Hepe08g0305 . . Cla02g01178 Cam02g1257 Cec02g1266 Cco02g1305 Clacu02g1239 Cmu02g1206 Cre02g1521 . Csa02g01403 . Cme11g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005071 2 3 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00267 Cma_Chr02 FPKM 5.92707 6.45471 4.617404 3.918937 5.591412 5.594241 5.950294 3.842072 3.817915 4.235487