Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00269 ATGGGAGCTTCCATTGACGTGTTAATTGCTATGTGGAGATTTTGGAGGGTTGTTTGGTCGAACCGACATGTCCACAAAGGTTCAGATGCTGGTGGGCGACAGGATGGTCTCCTATGGTACAAGGATAGTGGACAGCATGCGAATGGTGAGTTTTCAATGGCTGTCGTTCAAGCTAACAATTTACTTGAAGATCAAAGCCAGATTGAGTCAGGCAATTTGAGCTTGCACGAGTCTGGGCCATATGGTACCTTTGTTGGAGTGTATGATGGGCATGGAGGGCCCGAGACGTCGCGCTATGTTAACGATCACCTTTTCCAGCATCTTAAAAGGTTTACTTCAGAGCAACAATCCATGTCAGTGGATGTCATAAGAAAGGCCTTTCAAGCTACAGAAGACGGGGTCGTTGCTCAAGTTTCGAAACAATGGTCGATGAGGCCACAAATTGCAGCTGTTGGATCTTGCTGCCTTGTTGGTGTAATTTGTGGTGGAACCCTCTACATTGCTAACCTTGGTGATTCACGAGCTGTTTTAGGGAGAGTTGTGAAGGCAACAGGGGAAGTTTTGTCCGTTCAGTTGTCGGCCGAGCATAATGCATCTATAGAGTCTGTTCGGCACGAGCTACGTGCTCTGCATCCTGATGACCCCCAGATTGTAGTTTTGAAGCATAATGTATGGCGCGTGAAGGGCCTTATACAGGTTTCTCGATCGATCGGCGATGTCTATTTGAAGAAAGCTGAATTCAACCAAGAGCCTCTTTATGCCAAGTTTCGCCTTCGTGAACCGATCACAAAGCCGATACTGAGTGCCGAACCATCTATTTCGGTGCTCCAGTTACAGCCACAAGATCAATTTATTATATTTGCTTCAGATGGGCTCTGGGAACACCTTAGCAACCAGGAAGCTGTGGATATTGTCCAAAACCATCCACGTAGTGGAAGTGCAAGGAGGCTGGTGAAAGCAGCACTGCTAGAGGCAGCAAAGAAGAGAGAAATGAGATACTCTGACTTGAAGAAGATCGACCGTGGCGTACGGCGACATTTCCACGATGACATTACAGTGATTGTTGTGTTTCTCGACTCAAACCTCGTGAGCCGAGGTAGCTCTACAAAATGTGCAAGCCTATCCATACGAGGGGGCGGAGTTAACTTGCGTCCAAACTCATTGGCCCCGTGCACCACGCCATCAGACCACAGCATGGCCTGA 1203 47.96 MGASIDVLIAMWRFWRVVWSNRHVHKGSDAGGRQDGLLWYKDSGQHANGEFSMAVVQANNLLEDQSQIESGNLSLHESGPYGTFVGVYDGHGGPETSRYVNDHLFQHLKRFTSEQQSMSVDVIRKAFQATEDGVVAQVSKQWSMRPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRVVKATGEVLSVQLSAEHNASIESVRHELRALHPDDPQIVVLKHNVWRVKGLIQVSRSIGDVYLKKAEFNQEPLYAKFRLREPITKPILSAEPSISVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRSGSARRLVKAALLEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRGSSTKCASLSIRGGGVNLRPNSLAPCTTPSDHSMA 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1227050 1231220 + CmaCh02G002690.1 Cma02g00269 288020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00269 400 CDD PP2Cc 51 358 IPR001932 -
Cma02g00269 400 Pfam Protein phosphatase 2C 81 329 IPR001932 -
Cma02g00269 400 ProSitePatterns PPM-type phosphatase domain signature. 84 92 IPR000222 GO:0043169
Cma02g00269 400 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 20 390 - -
Cma02g00269 400 PANTHER ALPHABET, ISOFORM E-RELATED 20 390 - -
Cma02g00269 400 SMART PP2C_4 42 356 IPR001932 -
Cma02g00269 400 ProSiteProfiles PPM-type phosphatase domain profile. 50 358 IPR001932 -
Cma02g00269 400 Gene3D - 39 368 IPR036457 -
Cma02g00269 400 SUPERFAMILY PP2C-like 59 359 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00269 Cma11g01366 CCT
Cma02g00269 Cma19g00750 CCT
Cma02g00269 Cma20g00740 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00269 Cma-Chr2:1227050 Cma03g00656 Cma-Chr3:5525611 0 dispersed
Cma08g01281 Cma-Chr8:7769430 Cma02g00269 Cma-Chr2:1227050 2.01E-152 dispersed
Cma17g00372 Cma-Chr17:2077279 Cma02g00269 Cma-Chr2:1227050 1.43E-158 dispersed
Cma11g01366 Cma-Chr11:9047629 Cma02g00269 Cma-Chr2:1227050 0 wgd
Cma19g00750 Cma-Chr19:7473265 Cma02g00269 Cma-Chr2:1227050 0 wgd
Cma02g00269 Cma-Chr2:1227050 Cma20g00740 Cma-Chr20:3468634 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00269 - K01102 csv:101221640 717.613