Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00289 ATGGAACCGAAGAAAGTGGCGATCATCGGAGCCGGAGTAAGCGGACTAGTGGCCTGCAAATTCACTCTATCCAAAGGATTCATTCCGATTGTCTTTGAGGCGAGAGGCGATATTGGCGGCGTTTGGACGGAGACGCTGCAGACGACGGCGCTGCAGACGCCGAAAAAGTTGTACGAGTTTTCCGATTTCCCGTGGCCGAAATCGGTGACTGAAGATTTTCCCAAGTATGATAAAGTTGTCGATTACATCAAATCTTACGCCGACCATTTCGGATTGTTGAAGCACATCAGATTCAACACGAAAGTCCAGAGTATTGACTGTGAAGGCTGCTCCGACGAGGAACTTGAAGGTTGGACACTTTGGGGCGGTACCGGCGAGGCTTTCAGTGAACGGCGGAAATGGAGGATCAACGTCGTTGATGCTCGGACTAATGTTCCACTGGAGGAGGTGGTGGTGGACTTCGTTATACTCTGCATCGGAAGATTCAGCGACGTTCCAAATATCCCTGAGTTCCCTCCCAATGGAGGTCCTGAAGCTTTCAAAGCCGGTAAAGTTCTTCACTCTCTCCAGTATTCCGCCTTGGATTTCGACAGTGCTTCCAATCTCATCAAGGACAAGCAAGTCACCGTCATCGGTTTCCAGAAATCCGGTCTTGACCTCGCCATGGAATGCGCCAATGTCAATGGCCCGAAGAAGCCGTGCACGGTGGTCTACAGAACTGCGCACTGGACCATTCCCGATTTCTGTCCATGGGGGATCCCTATAGGTTTTCTCTACATGAACCGATTCTCTCAGCTTCTGATTCACAAACCTGGCGAGAGCTTCCTTCTCTATCTTCTCGCGATTCTGCTTTCTCCAATTAGATGGTTATTCTCGAAGATCGTGGAGACTCACGTGATGAAGAAGCACAGATTAAGCAAATACGGGATGGTGCCGGATCAAAGCTTCTTGCAGGACATGAGCTCATGTTTATTTGCAACATTGCCTGAGAAATTGTACGAAAAAGTGGATGAAGGAAGTATAATTTTGAAGAAATCGCCGAGTTTTGTCTTCTGTGAAGAGGGGATCATGATCGAAGGAGAAACCAAACCGATTCCCTCAGATTTAGTCATTTTGGCTACTGGATTTAGAGGTGATCAAAAGCTTAAACAAATCTTCACTTCTTCTACCTTACGGGATTACATGACGTTCCACGATCCAGCGGTTCCCATGTACAGGCTTTGCATCCATCCCAGAATTCCACAGCTAGCTGTGGTTGGATATTCAGAGAGCGCTTCAAACTTGTTCACTTCGGAGATGCGATGTCGATGGCTAGCGGAGTTTTTGGACGGGACGTTCAAGCTACCAAGCATCAAGGAGATGGAGAAGGACATAGCGGAGTGGGATAAGTGTATAAAGCTTTACTCAGGCCCTTACTTCAACCGAGGTTGCATCGCCACTTGGCATGTTTGTTACTGTGATCAGCTCTGCAAGGACATGGGGTGGAACCCCAATAGGAAGAAGGGCTTCCTTGCTGACTTGTTTCTACCTTATGGCCCTGCAGACTATGCTTCCCCTTGA 1560 48.33 MEPKKVAIIGAGVSGLVACKFTLSKGFIPIVFEARGDIGGVWTETLQTTALQTPKKLYEFSDFPWPKSVTEDFPKYDKVVDYIKSYADHFGLLKHIRFNTKVQSIDCEGCSDEELEGWTLWGGTGEAFSERRKWRINVVDARTNVPLEEVVVDFVILCIGRFSDVPNIPEFPPNGGPEAFKAGKVLHSLQYSALDFDSASNLIKDKQVTVIGFQKSGLDLAMECANVNGPKKPCTVVYRTAHWTIPDFCPWGIPIGFLYMNRFSQLLIHKPGESFLLYLLAILLSPIRWLFSKIVETHVMKKHRLSKYGMVPDQSFLQDMSSCLFATLPEKLYEKVDEGSIILKKSPSFVFCEEGIMIEGETKPIPSDLVILATGFRGDQKLKQIFTSSTLRDYMTFHDPAVPMYRLCIHPRIPQLAVVGYSESASNLFTSEMRCRWLAEFLDGTFKLPSIKEMEKDIAEWDKCIKLYSGPYFNRGCIATWHVCYCDQLCKDMGWNPNRKKGFLADLFLPYGPADYASP 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1348373 1352720 - CmaCh02G002890.1 Cma02g00289 288040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00289 519 PIRSF FMO 2 513 IPR000960 GO:0050660|GO:0050661
Cma02g00289 519 PANTHER DIMETHYLANILINE MONOOXYGENASE 4 517 - -
Cma02g00289 519 SUPERFAMILY FAD/NAD(P)-binding domain 359 516 IPR036188 -
Cma02g00289 519 Gene3D - 359 503 IPR036188 -
Cma02g00289 519 SUPERFAMILY FAD/NAD(P)-binding domain 1 274 IPR036188 -
Cma02g00289 519 Pfam Flavin-binding monooxygenase-like 4 506 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cma02g00289 519 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Cma02g00289 519 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 4 517 - -
Cma02g00289 519 Gene3D - 2 255 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00289 K00485 FMO; dimethylaniline monooxygenase (N-oxide forming) / hypotaurine monooxygenase [EC:1.14.13.8 1.8.1.-] - csv:101206134 889.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00289 Cma-Chr2:1348373 Cma02g00291 Cma-Chr2:1358732 0 dispersed
Cma02g00289 Cma-Chr2:1348373 Cma02g00290 Cma-Chr2:1354075 0 tandem
Cma02g00289 Cma-Chr2:1348373 Cma20g00721 Cma-Chr20:3333196 4.24E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g231 . . . . . . . . . . Cma02g00289 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi10g01243 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000621 2 8 2 2 1 4 2 5 5 4 3 5 4 3 4 4 4 1 1 3 4 3 2 4 4 3 1 4 3 7 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00289 Cma_Chr02 FPKM 3.662759 4.689834 27.639648 27.8353 11.260821 11.364402 12.351169 18.906248 20.424484 20.784468