Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00293 ATGGCGACGGCGCCTTTTCTACGCAACAGATATTGGATTCTCAGGCATGGCAAGAGCATTCCCAATGAGAAGGGCCTCATCGTTTCTTCTATAGAAAATGGTACCCTCCCTGAGTATCAGCTGGCTTCTGAGGGTGTTGGACAGGCGCAGTTGGCTGGAGAACAATTCTTAAAGGAGTTGAAGGAAAATTCCATACCGCTCGAAAATGTTCGGATTTGCTATTCGCCATTCTCAAGAACAATCCATACAGCTAAAGTGACGGCATCTGCACTGAATCTTCCATTTGAAAACCCTCAGTGCAAGATGATGGAAGATCTCAGGGAACGCTACTTTGGTCCTTCATTTGAGCTTTTGTCTCATGACAAATATGCAGAAATCTGGGCTCTTGATGAAGAAGACCCATTCATGCGGCCTGAAGGTGGAGAAAGCGTTGAAGATGTTGCTTCAAGATTAGCCAAAGCAGTGCTTCAAATGGAGTCACAATTTCAAGGGTGCGCCATCTTGGTGGTCAGCCATGGAGACCCCCTGCAAATTTTTCAGACGGTGATGGGTGCTGCCATGCATGAAAATGGATCGGGCTCTGATGAATTGGCATCGAGATTACAAGCCGCCATCACCAAACCCATTCTCTCGCAGCACCGGAAATTTGCTCTGCTCACCGGAGAGCTTCGAGCTGAGATTGTGGTGGACTTTGTTATACTCTGCATCGGAAGATTCAGCGACGTTCCGAGCATCCCTGAATTCCCTCCTAATGGCGGCCCTGAAGCTTTCAAAGCCGGTAAAGTTCTTCACTCTCTCCAGTATTCCGCCATGGATTTCGACACTGCTTCCAACCTCATCAAGGACAAGCAAGTCACCGTCGTCGGTCTCCATAAGTCCGCTCTTGATCTCGCCATGGAATGCGCCAACGCCAATGGTCCGAAGAATACCTGTACTTTTCTCTATAGAACCGCGCACTGGCACATTCCTGATCATCATCCATGGGGAATCCCTTTGTCTTTTCTCTATATGAATCGATTCGCCGAGCTTCTCATTCACAAGCCTGGCGAGAGCTTTCTTCTCTAA 1065 48.26 MATAPFLRNRYWILRHGKSIPNEKGLIVSSIENGTLPEYQLASEGVGQAQLAGEQFLKELKENSIPLENVRICYSPFSRTIHTAKVTASALNLPFENPQCKMMEDLRERYFGPSFELLSHDKYAEIWALDEEDPFMRPEGGESVEDVASRLAKAVLQMESQFQGCAILVVSHGDPLQIFQTVMGAAMHENGSGSDELASRLQAAITKPILSQHRKFALLTGELRAEIVVDFVILCIGRFSDVPSIPEFPPNGGPEAFKAGKVLHSLQYSAMDFDTASNLIKDKQVTVVGLHKSALDLAMECANANGPKNTCTFLYRTAHWHIPDHHPWGIPLSFLYMNRFAELLIHKPGESFLL 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1367977 1373835 - CmaCh02G002930.1 Cma02g00293 288044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00293 354 Pfam Histidine phosphatase superfamily (branch 1) 12 179 IPR013078 -
Cma02g00293 354 SMART PGAM_5 10 179 IPR013078 -
Cma02g00293 354 SUPERFAMILY FAD/NAD(P)-binding domain 219 351 IPR036188 -
Cma02g00293 354 CDD HP_PGM_like 10 179 IPR013078 -
Cma02g00293 354 PANTHER PHOSPHOGLYCERATE MUTASE FAMILY PROTEIN 3 225 - -
Cma02g00293 354 Gene3D - 211 343 IPR036188 -
Cma02g00293 354 SUPERFAMILY Phosphoglycerate mutase-like 12 180 IPR029033 -
Cma02g00293 354 Gene3D - 9 209 IPR029033 -
Cma02g00293 354 Pfam Flavin-binding monooxygenase-like 226 346 IPR020946 GO:0004499|GO:0050660|GO:0050661
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00293 - - - csv:116403875 365.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00293 Cma-Chr2:1367977 Cma11g00758 Cma-Chr11:3684296 1.77E-30 dispersed
Cma02g00291 Cma-Chr2:1358732 Cma02g00293 Cma-Chr2:1367977 3.22E-84 proximal
Cma02g00293 Cma-Chr2:1367977 Cma02g00296 Cma-Chr2:1381399 8.85E-56 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g235 . Blo15g00431 Bda06g00437 . . . . . . . Cma02g00293 . Car02g00172 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g3471 Cmo02g00287 . . . . . . . Bhi10g01237 Tan05g1065 Cmetu11g0158 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009397 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00293 Cma_Chr02 FPKM 4.113411 7.042113 3.438122 3.042351 8.290809 8.076684 8.562674 12.399616 11.930257 13.415967