Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00304 ATGGAGTACAGAAGGATCAAAGATCAGGATAAAGATGGCAATGGAGATGACAGCGGGGCTGGTGTTGCTGTGGCAGATGACTTAGAGAGCTTGCGCGGTGGGAAAGCAATTTCAGGCGCGAGCAATATGGCGAAATTGGGAGGAAATCCTTTGGATAGATCAAAGTGGCAGCAGAAGTCCATAGTTACGCTTGCATTAACAGTTCTTACTAGTTCACAAGCAATACTCATTGTGTGGTCCAAGAGAGCAGGCAAATATGAATACAGTGTTACAACTGCAAATTTCATGGTGGAGACTTTGAAGTGTGTATTATCGCTTGCTGCTTTGAGTCGAATCTGGAGAAGTGAAGGTGTGACTGAAGATAACAAGTTGAGCACAACTTATGATGAGGTTATTGTCTATCCTATTCCTGCGGCCCTTTATCTCGTCAAGAATTTGCTCCAGTATTACATTTTTGCTTATGTGGATGCGCCGGGTTATCAGATATTGAAAAATTTCAATATCATCAGCACGGGTATTTTGTACAGAATCATACTTAAGAAAAAGTTAAGTGAGATCCAGTGGGCGGCGTTTGTTCTTCTATGTGCTGGCTGCACCACTGCACAGCTAAATTCGAACTCAGATCATGTTCTTCAGACACCTTTTCAAGGTTGGCTGATGGCTATAATCATGGCACTCTTGAGTGGATTCGCTGGAGTGTACACTGAGGCTATAATTAAGAAACGCCCTTCAAGGAATGTAAATGTACAAAACTTCTGGTTATATGTGTTTGGGATGGCGTTCAATGCTATTGCCATGCTGATTCAAGATTTTGATGCAATCGCGAACAAGGGATTCTTTCATGGTTACTCGTTTATTACAGTTCTCATGATTCTGAATCATGCCCTCAGTGGCATTGCTGTATCTATGGTATTGAAGTATGCAGATAACATTGTGAAGGTTTATTCCACTTCAGTGGCAATGCTTCTCACCGCAGTGGTTTCTGTTTTTCTGTTTGGCTTTCATCTCTCCCTCGCCTTTTTCCTTGGATCAACTGTCGTATCGGTTGCGGTCTATCTACACTCAATTGGGAAGCTGCAAAAGTAG 1086 42.45 MEYRRIKDQDKDGNGDDSGAGVAVADDLESLRGGKAISGASNMAKLGGNPLDRSKWQQKSIVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFMVETLKCVLSLAALSRIWRSEGVTEDNKLSTTYDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGILYRIILKKKLSEIQWAAFVLLCAGCTTAQLNSNSDHVLQTPFQGWLMAIIMALLSGFAGVYTEAIIKKRPSRNVNVQNFWLYVFGMAFNAIAMLIQDFDAIANKGFFHGYSFITVLMILNHALSGIAVSMVLKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSTVVSVAVYLHSIGKLQK 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1426164 1430954 + CmaCh02G003040.1 Cma02g00304 288055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00304 361 MobiDBLite consensus disorder prediction 1 15 - -
Cma02g00304 361 MobiDBLite consensus disorder prediction 1 21 - -
Cma02g00304 361 TIGRFAM nst: UDP-galactose transporter 136 353 - -
Cma02g00304 361 Pfam Nucleotide-sugar transporter 59 354 IPR007271 GO:0000139|GO:0015165|GO:0016021|GO:0090481
Cma02g00304 361 PIRSF UDP-gal_transpt 38 361 IPR007271 GO:0000139|GO:0015165|GO:0016021|GO:0090481
Cma02g00304 361 PANTHER NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER 44 360 IPR007271 GO:0000139|GO:0015165|GO:0016021|GO:0090481
Cma02g00304 361 PANTHER CMP-SIALIC ACID TRANSPORTER 4 44 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00304 K15272 SLC35A1_2_3; solute carrier family 35 (UDP-sugar transporter), member A1/2/3 K16290 csv:101213027 659.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00304 Cma-Chr2:1426164 Cma08g00105 Cma-Chr8:558706 5.34E-71 dispersed
Cma02g00304 Cma-Chr2:1426164 Cma08g00081 Cma-Chr8:424643 1.02E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g305 . Blo15g00415 Bda06g00448 . . . . Bma12g00886 . . Cma02g00304 . Car02g00183 . . . . . . . . . . . . . . . . . . Cone12ag1289 Cone8ag1341 . . . . . . . . . . . . . . . Cmo02g00297 . . . . . . Cpe05g01334 . . . . . . . Cla02g01058 Cam02g1130 Cec02g1134 Cco02g1174 Clacu02g1118 Cmu02g1081 Cre02g1385 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008461 1 0 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 0 1 1 5 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00304 Cma_Chr02 FPKM 9.302093 10.594506 9.597266 9.881206 13.436199 12.953721 13.143953 8.402618 7.338811 9.654131