Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00306 ATGAATTTCATATCTCATCATCTTCTTCTCCTCTCCATTACAACCCTTTTCTTGTTTCTCTCAATTTCTGCAGCCGAAGAAGATCCATTATCTTCCTCTTCAATCGTATCAAGATTCCAACGATACCTTCAGATCAACACCGTTCAGCCCAATCCCCAATACTATGAAGCAGCCGATTTCATCATTTCTCAAGCCAAATCGCTCTCCCTTGAATACCACACCGTCGAATTCGTCGTGGGCAAGCCTCTCGTCCTCCTCAAATGGCCTGGTTCGAACCCTAATCTTCCTTCGATCCTTCTCAATTCGCATACCGATGTTGTTCCATTCGAGCATCACAAATGGACGCACCCTCCTCTTGGAGCTCATATCGATTCCCATGGAAATATCTATGCCAGAGGGTCTCAGGATATGAAGTGCGTGGGGATGCAATACCTCGAGGCTATTCGGCGTTTGAAGGCTTCTGGGTTTGAGCCTGTGCGGTCTGTTTACTTATCTTTTGTTCCAGATGAAGAAATTGGTGGCCATGGTGGTGCTGAGAAGTTCGCTGAATCTGATGAGTTCAAGAAGTTGAATGTCGCCATTGTTCTTGACGAAGGATTGCCTTCTCCGAGTGAGAATTATAGGGCGTTTTATGGGGAGAGGAGCCCTTGGTGGTTGGTGATCAAGGCAGTGGGAGCGCCTGGCCATGGAGCTAAGCTTTATGATAATGCTGCCTTGGAGAATCTGTTCAAAAGTATTGAGAGTGTGAGAAGGTTCAGAGCTTCTCAGTTTGATTTGTTGAAGGCTGGTTTGAAGGCTGAAGGAGAGGTGGTCTCTGTCAACATGGTGTCCTTAAAAGCTGGGACTCCATCTCCTACTGGCTTTGTTATGAATCTGCAACCATCCGAAGCTGAGGCTGGTTTCGACGTTCGCCTCCCACCGACTGCAGATCCAGAGTCTCTCGAGAGACGAATCGCAGAGGAATGGGCACCAGTTTCTCGTAACATGACATTTGAGTTTAAGCAAAAGGAGTCTATTTACGACAAGTTCGGGAAACCAGCTCTCACCGCTATCGACAGTTCAAACCCGTGGTGGAATCTTCTTGAAGAAGCTGTGAGAAATGCTAATGGGAAACTTGGAAACCCAGAAATCTTTCCCGCTTCAACCGATGCCCGGTACTTTCGAAATCAAGGTCTCCCTGCTATCGGCTTCTCTCCAATGGCGAACACTCCTAGTCTTCTTCATGACCATAATGAGTTTCTGAACCAAGCTGAGTATTTGAAAGGAATCGAGGTGTACGAGTCAATAATCAAGTCTTATGCTTCTTACGTCGGTCGCGACAACTTCAAAGATGAGTTATAA 1341 46.53 MNFISHHLLLLSITTLFLFLSISAAEEDPLSSSSIVSRFQRYLQINTVQPNPQYYEAADFIISQAKSLSLEYHTVEFVVGKPLVLLKWPGSNPNLPSILLNSHTDVVPFEHHKWTHPPLGAHIDSHGNIYARGSQDMKCVGMQYLEAIRRLKASGFEPVRSVYLSFVPDEEIGGHGGAEKFAESDEFKKLNVAIVLDEGLPSPSENYRAFYGERSPWWLVIKAVGAPGHGAKLYDNAALENLFKSIESVRRFRASQFDLLKAGLKAEGEVVSVNMVSLKAGTPSPTGFVMNLQPSEAEAGFDVRLPPTADPESLERRIAEEWAPVSRNMTFEFKQKESIYDKFGKPALTAIDSSNPWWNLLEEAVRNANGKLGNPEIFPASTDARYFRNQGLPAIGFSPMANTPSLLHDHNEFLNQAEYLKGIEVYESIIKSYASYVGRDNFKDEL 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1433405 1436951 - CmaCh02G003060.1 Cma02g00306 288057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00306 446 Gene3D - 218 327 - -
Cma02g00306 446 TIGRFAM Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase 32 435 IPR010159 GO:0004046|GO:0005737|GO:0006520
Cma02g00306 446 Gene3D Zn peptidases 29 217 - -
Cma02g00306 446 CDD M20_AcylaseI_like 36 434 - -
Cma02g00306 446 SUPERFAMILY Zn-dependent exopeptidases 33 434 - -
Cma02g00306 446 PIRSF ACY-1 25 438 - -
Cma02g00306 446 Pfam Peptidase family M20/M25/M40 99 431 IPR002933 GO:0016787
Cma02g00306 446 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 134 173 IPR001261 -
Cma02g00306 446 PANTHER BNAA06G40880D PROTEIN 15 446 - -
Cma02g00306 446 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 98 107 IPR001261 -
Cma02g00306 446 Pfam Peptidase dimerisation domain 211 321 IPR011650 -
Cma02g00306 446 PANTHER AMINOACYLASE-1 15 446 - -
Cma02g00306 446 Gene3D - 355 435 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00306 K14677 ACY1; aminoacylase [EC:3.5.1.14] - csv:101213747 786.563
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00306 Cma-Chr2:1433405 Cma04g02353 Cma-Chr4:16323465 3.17E-175 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g310 . . . . . . . . . . Cma02g00306 . Car02g00185 . . . . . . . . . . . . . . . . . . . . Cone17ag1276 . . . . . . . . . . . . . . Cmo02g00300 . . . . . . Cpe05g01333 . . . . . . . Cla02g01055 Cam02g1127 Cec02g1131 Cco02g1169 Clacu02g1115 Cmu02g1078 Cre02g1382 . . . Cme11g01027
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011281 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00306 Cma_Chr02 FPKM 40.201279 44.677921 57.631287 57.134434 53.879887 54.416267 52.445896 41.786884 41.995579 41.564919