Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00309 ATGGAGGATAAGCGAGGTATAAGCAGTAACGGGCCTCTTGACAAGTGGATGACATTTGATGGGGAATCAAATGCATCAAACACTCCGGAAAATGTAGCAAAAGAAGACAGAAAAAGCTGGCAGTCCTCTTCTAAAGGGGTAATATCAACAGAAGCAAACATAGCAGAAAGGGCGGCTGAGTGGGGACTGGTGGTAGAAACAGATGCGGAGGATGGCAGTTTCAAGGCCATCGTGGGAAGATCATCAGGGGAGGGAGGCGGCAGCAAAAGTTCATCAGAGAAAATTAGTGGCGCGGGAAAAACTGAAAGCTCTGGAGTTTTTCCAAGGGTATCACAAGAGTTGAAGGATGCTTTGGCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCCACCCGACCAGACTGCCCCATCGTGTATGCGAGCAGTGGGTTCTTTGGCATGACTGGTTATGGTTCAGATGAGGTCATTGGAAAAAACTGCCGTTTTCTTCAGGGACCAGAGACGGACCAGAAAGAAGTTGAAAAAATTCGATATGCAGTGAAGAACGGCAAAAGCTACTGTGGGAGGCTCTTGAACTACAAGAAGGATGGCACTCCTTTCTGGAATCTTCTGACAATCACGCCTATCAAGGATGACAATGGCAAAACTATCAAATTTATTGGAATGCAGGTGGAAGTAAGCAAGTACACAGAAGGCAAAGTTGATAGAGCATTAAGACCGAATGGGTTACCGAAGTCATTAATCCGCTATGATGCTCGCCAGAAGGAAAAGGCTTTGGGTTCCATCACAGAGGTTGTTCAGACTGTGAAGAACCCTCAATCTAATAATCGAGCTATGAGTCACGACATTACCAGGAAAAAAGAAGAGTTGGAGAAGTTTAATCTTGACCATGCTCTTCCCAAGTCAGTTGCAGCTGCAAATTATTCACCGGGTAGACAGACTCCTCAACAGGACCTCACAGATGATGGCTTAGGCAAGAAATCTAGGTTATCAAGTCGAGTTTCTTTAACGGGGAAAAAAGGGAAATCTCTTAGCAGTTCAAGAAATCTTGAAGTAACAGCCCTTGAACCAGAAATTTTGATGACCGATGAAATAGAATGGACTGATAGTTTGGACCGTGCTGAAAGAGAAAGGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGCGCATTGAGAAAAACTTCGTCATTTCTGATCCAAGGCTTCCTGATAATCCAATTATATTTGCATCCGACAGCTTTCTCGAGTTGACAGAATATACACGTGAAGAAATTTTGGGACGGAACTGCCGGTTTCTTCAAGGACCTGAAACAGATCAAGATACCGTCTCGAAGATTAGGGATGCAATTAGGGAACAAAGAGAAATAACTGTTCAGTTGATCAACTATACCAAGACGGGTAAAAAGTTCTGGAATTTATTCCACTTGCAACCGATGCGTGATGAAACGGGAGAGCTTCAGTATTTTATCGGTGTACAACTAGATGGAAGTGGTCGTGTGGAACCTTTGCAAAACCGTCTTTCTGAGACAGCAGAGCAGGAGAGTGCCATGCTGGTTAGAGCCACTGCAGAGAATGTTGATGAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTTATTCTCAACCAGTCTTCCCAAGGCCTCACAAAAAGCATAGTTCTTCTTGGACTGCTATACAAAAGATTATTCAACGTCGTGAAAAAATTGGACTCCAACATTTTAAGCCAATCAAACCACTGGGTTATGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGCGAACTTTATGCCTTGAAAGCAATGGAGAAATCAACACTTTTGAATCGAAACAAGGTCCACAGAGCATGCATTGAAAGGCAAGTCGTTGCGCTTCTGGATCATCCTTTTCTTCCAACACTATACACTTCATTTGAGACCCCTACACACGTTTGTTTGATATCAGACTTTTGCCCTGGTGGGGAGTTATTTGCATTGCTTGATAAGCAGCCAATGAAATTGTTTAAAGAGGATTCTGCTAGGTTCTATGCTGCGGAGGTCGTCATTGGCTTGGAATATCTTCACTGTCTAGGAATCATCTATCGAGATCTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGGCACGTTACGCTTGCTGACTTCGATTTATCGCTTATGACAGCCTGCAAACCACAGATTGTGAAGTATCCATCGCCTCACGGTAGAAGGAGATCTCGAAGTCAACCACCGCCAGTATTTGTTGCAGAGCCGATGACACAGTCGAACTCATTTGTTGGAACCGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGCCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATTTTGTTGTACGAGATGCTTTACGGCCGCACGCCTTTTAGGGGAAAGAACAGGCAGAAGACTTTTGATAACATCCTGCACAAAGATCTCACCTTCCCAAGTAGCATTCAGGTAAGTCTTGCAGCAAGGCAGCTGATCAACGCATTGCTACAACGAGACCCTGCCCGACGTTTAGGATCGAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTTTTCCAATCAATCAACTGGCCGCTGATCCGATGCATGGTCCCACCACCATTAGAATCACCTCTTAACCTTACTGGGAAAGATGAATCTGCCAAGAACGTAAACTGGGAAGATGATGGAGTGCTTACTACAATGGATATGGATCTTTTTTGA 2757 44.4 MEDKRGISSNGPLDKWMTFDGESNASNTPENVAKEDRKSWQSSSKGVISTEANIAERAAEWGLVVETDAEDGSFKAIVGRSSGEGGGSKSSSEKISGAGKTESSGVFPRVSQELKDALASLEQTFVVSDATRPDCPIVYASSGFFGMTGYGSDEVIGKNCRFLQGPETDQKEVEKIRYAVKNGKSYCGRLLNYKKDGTPFWNLLTITPIKDDNGKTIKFIGMQVEVSKYTEGKVDRALRPNGLPKSLIRYDARQKEKALGSITEVVQTVKNPQSNNRAMSHDITRKKEELEKFNLDHALPKSVAAANYSPGRQTPQQDLTDDGLGKKSRLSSRVSLTGKKGKSLSSSRNLEVTALEPEILMTDEIEWTDSLDRAERERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQDTVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGRVEPLQNRLSETAEQESAMLVRATAENVDEAVRELPDANLRPEDLWAIYSQPVFPRPHKKHSSSWTAIQKIIQRREKIGLQHFKPIKPLGYGDTGSVHLVELLGTSELYALKAMEKSTLLNRNKVHRACIERQVVALLDHPFLPTLYTSFETPTHVCLISDFCPGGELFALLDKQPMKLFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLMTACKPQIVKYPSPHGRRRSRSQPPPVFVAEPMTQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFDNILHKDLTFPSSIQVSLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLNLTGKDESAKNVNWEDDGVLTTMDMDLF 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1464696 1475501 - CmaCh02G003090.1 Cma02g00309 288060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00309 918 MobiDBLite consensus disorder prediction 77 106 - -
Cma02g00309 918 ProSiteProfiles PAS repeat profile. 110 183 IPR000014 -
Cma02g00309 918 ProSitePatterns Serine/Threonine protein kinases active-site signature. 704 716 IPR008271 GO:0004672|GO:0006468
Cma02g00309 918 Gene3D Transferase(Phosphotransferase) domain 1 667 888 - -
Cma02g00309 918 SMART pas_2 112 181 IPR000014 -
Cma02g00309 918 SMART pas_2 384 453 IPR000014 -
Cma02g00309 918 SUPERFAMILY PYP-like sensor domain (PAS domain) 401 497 IPR035965 -
Cma02g00309 918 Pfam PAS domain 131 227 IPR000014 -
Cma02g00309 918 Pfam PAS domain 405 497 IPR000014 -
Cma02g00309 918 CDD PAS 405 497 IPR000014 -
Cma02g00309 918 Gene3D PAS domain 371 535 - -
Cma02g00309 918 ProSiteProfiles PAC domain profile. 456 510 IPR000700 -
Cma02g00309 918 SUPERFAMILY PYP-like sensor domain (PAS domain) 131 223 IPR035965 -
Cma02g00309 918 SMART pac_2 187 229 IPR001610 -
Cma02g00309 918 SMART pac_2 459 501 IPR001610 -
Cma02g00309 918 ProSiteProfiles PAC domain profile. 184 238 IPR000700 -
Cma02g00309 918 PANTHER BNAA02G07840D PROTEIN 82 917 - -
Cma02g00309 918 CDD STKc_phototropin_like 581 889 - -
Cma02g00309 918 Gene3D PAS domain 124 297 - -
Cma02g00309 918 MobiDBLite consensus disorder prediction 1 48 - -
Cma02g00309 918 CDD PAS 137 226 IPR000014 -
Cma02g00309 918 MobiDBLite consensus disorder prediction 84 99 - -
Cma02g00309 918 ProSitePatterns Protein kinases ATP-binding region signature. 589 612 IPR017441 GO:0005524
Cma02g00309 918 PANTHER FLIPPASE KINASE 1-RELATED 82 917 - -
Cma02g00309 918 SMART serkin_6 583 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00309 918 Gene3D Phosphorylase Kinase; domain 1 582 666 - -
Cma02g00309 918 ProSiteProfiles PAS repeat profile. 382 455 IPR000014 -
Cma02g00309 918 MobiDBLite consensus disorder prediction 307 321 - -
Cma02g00309 918 TIGRFAM sensory_box: PAS domain S-box protein 137 227 IPR000014 -
Cma02g00309 918 TIGRFAM sensory_box: PAS domain S-box protein 408 497 IPR000014 -
Cma02g00309 918 ProSiteProfiles Protein kinase domain profile. 583 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00309 918 SUPERFAMILY Protein kinase-like (PK-like) 558 896 IPR011009 -
Cma02g00309 918 Pfam Protein kinase domain 585 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00309 918 MobiDBLite consensus disorder prediction 330 348 - -
Cma02g00309 918 MobiDBLite consensus disorder prediction 306 348 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00309 Cma19g00829 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00309 Cma-Chr2:1464696 Cma02g00853 Cma-Chr2:4972923 0 dispersed
Cma04g01630 Cma-Chr4:8216817 Cma02g00309 Cma-Chr2:1464696 3.00E-25 dispersed
Cma19g00829 Cma-Chr19:7872965 Cma02g00309 Cma-Chr2:1464696 5.77E-16 wgd
Cma02g00309 Cma-Chr2:1464696 Cma20g00692 Cma-Chr20:3167759 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68321 PF00069 Pkinase 1.70E-61 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00309 K20715 - csv:101215355 1600.1