Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00313 ATGACTGTATACATAATGGGGGCTTTCGATTCCATAGGCGTAAGGCTTTACAACAATGCCCATCATTACCCTCTTTCTTCTTCAATTTCTGCCCCAAATGACTGTTGCAGCAGCTATGGCCGTTTCTTGAGTCTTCGTTTTTCTCTTCGCCCAAAACGAACTGGGTTTCGTTTTAGGTCATTTTGTGCTCTGCCCGGCAGCGGAGAATCTGAATCCCCTGTTCCTGGTAGCAGCGACGGCCGGTTTAGCAGAGGCGAAGGTTCGCCGTCGGCGACGGGTATAAAATGGAGCAAAGAAGAGGAAGAAGAAGACAATACAGAAGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTATCCCCTCTGGAATTGGGAGTTCAACAATAATCTCATCGTGTTTCGTTGGTGTTCTTACGGGCATCGGCGTCGTGCTCTTCAATAACGCAGTGCATGAGCTACGTGATTTTTTCTGGGATGGAATTCCTAATAGAGGAGCTTCTTGGTTAAGAGAAATGCCTGTTGAAGAAACATGGAAACGAGTTATATTGGTTCCTGCTTGTGGGGGATTTCTTGTTAGCTTTCTAAATCTGCTTAGAGAGGCTACAAACAGTGATCCTTCCACGAAACTTGGAGTTCCAGTTTCCATTTCTAATCAATTCAGGGCTGCACTGCAACCTTTCCTTAAGGCTGTAGCTGCTTCTGTAACCCTTGGAACAGGTAACTCTTTGGGGCCGGAGGGTCCGAGTGTCGACATCGGTACTTCTGTTGGCAAGGGTGTTTCTACTGTGTTTGACAGGAACTCTAGAACAAAGCTTTCTCTGATAGCTGCAGGATCAGCTGCTGGCATCTCATCTGGGTTTAATGCTGCAGTTGCTGGCTGTTTCTTTGCTGTTGAGTCAGTCCTGTGGCCATCTCCTGCAGATTCAACTTTTTCTCTCACAAACACTACTTCAATGGTTATCTTAAGTGCTGTAATAGCTTCTGCTGTTTCACAAGTTGGTCTTGGGGTTGAACCAGCATTCAAGGTTCCTGAATACGATTTTCGCTCACCGAGTGAGCTTCCACTGTATCTGTTGTTGGGTGCACTCTGTGGCTTGGTTTCATTGAGCTTTTCTAAATGCACATCTTATATGCTTGCAACCGTCGACAAAGTTCATAAGGACTTCGGTGTGTCGAGGGCTTTGTTTCCTATTCTAGGTGGCTTCTCTACTGGACTGATAGCCATGGCATACCCTGAAATTCTGTACTGGGGGTTTGAGAATGTTGATCTTTTGTTGGAATCTCGGCCATTTGTGAAACCCCTCTCAGCTGAATTGTTAGCCCAGCTTGTTGTTGTCAAGATTTTGGCGACCTCTTTGTGTAGAGCATCTGGACTAGTAGGAGGGTACTATGCGCCATCTCTGTTTATTGGCGCTGCAACTGGAATGGCATATGGGAAATTCATTGGAATTGCACTTTCTGAGCCCAACACAGTGATCGACTTCTCCATTTTCGAAGTGGCGTCGCCTCAAGCTTATGGATTGGTTGGAATGGCTGCTACTCTTGCTGGGGTTTGTCAGGTGCCTCTTACTGCTGTTTTGTTGCTTTTTGAGCTGACACAGGACTACCGAATTGTTCTTCCTTTACTTGGAGCTGTCGGGGTGTCGTCGTGGTTAACATCCGGGCAGAAAAGGAAAAGGAGTTCCCAGAAGACAAAGAAACTCCCTCTAGGGAAAATTCTTAGTACTCAACAATCTACAACATATGACAGTAATGCAAATGACCAATCTTCCAATTATACAGATGATGGAAAGGAAACTTACCCAAATGATCTCTGTGAAATTGAAAGCTCACTTTGTGCATATGATTCTGATAGCGAAATTGTAGAGTTAGAAAGGAAGATATGTGTGTCTGAAGCCATGACAACAAGATACGTTACTGTCTTCATGGACACTTTCCTTATAGAAGCAGTAGATCTCATGCTTGCAGAGAAGCAGTCCTGTGCATTGATTGTGGATGAAGAGAATACTTTGATTGGCATATTGGCCCTTGAAGACATTCAAAAGTTAAGCAAAAATGTAATATCAAGAACTGAGCAACTAAAGGGGCTAGTAGTTTCTGAGATTTGCTCACTGGAAGGCGAGATATGTCAAGTACCATGGACAGCAACTCCAAGTATGGACATTCTTACAGCTAAAATGGTTATGAAGAATTTAGGTGTGAGCCAAGTTCCAGTGGTGAAAGATCAGATGGGTTACCTTGTGGGTGTTCTAGACTTGGAGTGTATTGATCTCACACGCAGAATTCTTGCAACAAGAGAATCCCTCGGCTGA 2313 44.49 MTVYIMGAFDSIGVRLYNNAHHYPLSSSISAPNDCCSSYGRFLSLRFSLRPKRTGFRFRSFCALPGSGESESPVPGSSDGRFSRGEGSPSATGIKWSKEEEEEDNTEEDEEEEEEEEEGIPSGIGSSTIISSCFVGVLTGIGVVLFNNAVHELRDFFWDGIPNRGASWLREMPVEETWKRVILVPACGGFLVSFLNLLREATNSDPSTKLGVPVSISNQFRAALQPFLKAVAASVTLGTGNSLGPEGPSVDIGTSVGKGVSTVFDRNSRTKLSLIAAGSAAGISSGFNAAVAGCFFAVESVLWPSPADSTFSLTNTTSMVILSAVIASAVSQVGLGVEPAFKVPEYDFRSPSELPLYLLLGALCGLVSLSFSKCTSYMLATVDKVHKDFGVSRALFPILGGFSTGLIAMAYPEILYWGFENVDLLLESRPFVKPLSAELLAQLVVVKILATSLCRASGLVGGYYAPSLFIGAATGMAYGKFIGIALSEPNTVIDFSIFEVASPQAYGLVGMAATLAGVCQVPLTAVLLLFELTQDYRIVLPLLGAVGVSSWLTSGQKRKRSSQKTKKLPLGKILSTQQSTTYDSNANDQSSNYTDDGKETYPNDLCEIESSLCAYDSDSEIVELERKICVSEAMTTRYVTVFMDTFLIEAVDLMLAEKQSCALIVDEENTLIGILALEDIQKLSKNVISRTEQLKGLVVSEICSLEGEICQVPWTATPSMDILTAKMVMKNLGVSQVPVVKDQMGYLVGVLDLECIDLTRRILATRESLG 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1484404 1487617 - CmaCh02G003130.1 Cma02g00313 288064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00313 770 MobiDBLite consensus disorder prediction 101 120 - -
Cma02g00313 770 Coils Coil 96 118 - -
Cma02g00313 770 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 113 768 - -
Cma02g00313 770 Pfam Voltage gated chloride channel 226 553 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma02g00313 770 MobiDBLite consensus disorder prediction 66 125 - -
Cma02g00313 770 Pfam CBS domain 630 682 IPR000644 -
Cma02g00313 770 Gene3D Clc chloride channel 122 568 - -
Cma02g00313 770 CDD CBS_pair_voltage-gated_CLC_euk_bac 634 757 - -
Cma02g00313 770 ProSiteProfiles CBS domain profile. 634 692 IPR000644 -
Cma02g00313 770 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 113 768 - -
Cma02g00313 770 PRINTS Chloride channel signature 229 248 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma02g00313 770 PRINTS Chloride channel signature 280 299 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma02g00313 770 PRINTS Chloride channel signature 459 479 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma02g00313 770 PRINTS Chloride channel signature 504 520 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma02g00313 770 PRINTS Chloride channel signature 522 541 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cma02g00313 770 SUPERFAMILY CBS-domain pair 625 754 IPR046342 -
Cma02g00313 770 SUPERFAMILY Clc chloride channel 129 554 IPR014743 -
Cma02g00313 770 MobiDBLite consensus disorder prediction 579 598 - -
Cma02g00313 770 CDD Voltage_gated_ClC 136 550 - -
Cma02g00313 770 SMART cbs_1 712 761 IPR000644 -
Cma02g00313 770 SMART cbs_1 637 685 IPR000644 -
Cma02g00313 770 Gene3D - 625 768 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00313 - - - mcha:111011346 1130.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00313 Cma-Chr2:1484404 Cma16g00996 Cma-Chr16:7660170 3.11E-109 dispersed
Cma02g00313 Cma-Chr2:1484404 Cma06g00702 Cma-Chr6:3517781 1.14E-122 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g331 . . . . Bpe07g00690 . . Bma12g00894 . . Cma02g00313 . Car02g00193 . . . . . . . . . . . . . . . . . . Cone12ag1281 . . . . . . . . . . . . . . . . Cmo02g00307 . . . . . . Cpe05g01327 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010114 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00313 Cma_Chr02 FPKM 2.737274 2.545892 2.953009 3.279796 5.136502 4.649899 5.739966 2.478774 1.964873 1.946588