Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00314 ATGCCACTTACTCTGATCGGCGTCGGGTTGAGGTTCAATCTCGGAATCTCCATTGCAGTTACTCTCATGGCTTCCAATTCGACGAAGGATGTTGCTGCTGATGAGAAGACAGCTTCGTCAGATAACAAAAGTGCCAAAAGTGAAACAATCAAAAGTGAAACAACCAAAAGCGAAACATCCTCTGCAGAGCATCAGCCAGATAAACCAAAGGCTCCCTCAGCCTCACTTCCTGAATTTCCTCCAAATCCTTTTGATTTCTCAGCAATGACTGGCTTGCTTAACGATCCTAGCATTCAAGAATTAGCTTCTCAAATAGCAAAAGATCCTGCATTTACTCAGATGGCGTCAGAACTTCAGAAGAATTTTCACGGTGCTTCTGCTCAGCAGGGTATTCCGCAGTTTGATACGCAACAATACTATTCTACCATGCAGCAGGTCATGCAGAATCCTCAATTTATGTCAATGGCTGAGCGCCTTGGCAATACATTAATGCAGGATCCATCCATGTCTAGCATGCTGGAAACTTTTGCAAATCCATCCAATAAAGAGCAGCTTGAGGAACGTATGACACAGATCAAGCAAGATCCAACTTTGAAGCCTATTTTAGATGAAATAGAGACTGGTGGTCCAGCTGCCATGATGAGGTACTGGAATGACAGAGACGTCTTGAAAAAGTTGGGCGAAGCAATGGGTTTTGCAGTTAATGGAGAAGATGGAGCCAATGCTGAAAGTTCTGTTGCAGATGATTCAGAAGAAGTAGGAAATGATGACGAATCTATAGTTCATCAAACTGCTAGTGTTGGTGATGTCGAGGGCCTAAAAAATGCACTAGCAGCCGGTGAGAACAAGGATGAAGAAGATTCAGAGGGAAGGACCGCTTTGCATTTTGCATGTGGGTATGGTGAGGCGAAATGCGCTCAGATCCTTCTTGAAGCTGGAGTGAAGGTGGATGCACTGGATAAGAACAAGAACACTGCACTTCATTATGCAGCTGGTTATGGCAGGAAGGAGTGTGTTGCACTGTTACTCGAGAATGGCGCTGCACACTCTCCAAAACTTGGATGGAAAGACCCCCATAGATGTTGCCAAGCTAAACAACCAACACGAGGTGCTCAAATTGCTCGAGAAGGACGTTTTCCTGTAACTTTTGAAGCCACGGGAAAGATTTTGTGCCATAACTCAAGCACGCACGCCACGGGCACAGGCATTTCTATGATTCTAGCTTTATCTACTTTTGAAAACGCTACTGCTTACTTCAACAAAACCCAACTGAAGAAGCCGAGGGGAGAGCTTCCATTGAGAGTGGACTTTGCAGCAACAATTTTGGGGTCAAAAGGTTCAAACTTTGAGGATTTAAGAACATTCTGCAGTTTGATGAATTTGGGAGCAATATCTTTGAGCAAATGTTTTGATCTGGATTTGAAGAAGAAGAAGAAGAAGAAGAAGATGCTGATGGAGGAGAGGAAGTCGTCCTCTGTTTCAGATGTTGGAGCTTGGGGTATGAACATAATCAGCTCAGTGGGCATCATCATGGCCAACAAGCAGCTCATGTCCCAAACTGGCTTTGCCTTTTCCTTTGCTACAACCTTAACTGGATTTCACTTTTCTGCAACTGCAATGGTTGGCTGGATTTCAAATGCCACTGGCTATTCTGAATCCAAATCTGTTCCCATCTGGGAGCTTCTTTGGTTCTCGATTATCGCTAACACGTCGATAGCAGCCATGAACTTCAGCCTCATGTTAAACTCCGTTGGATTCTATCAGATATCAAAGCTAAGCATGATACCAGTGGTTTGTGTAATGGAATGGATTCTTCATGGAAAACAATACTCAAGGGAAGTGAAGATGGCCGTAGCCGTGGTCGTTGTCGGTGTCGGGGTCTGTACAGTGACTGATGTGAAGGTTAATGCCAAAGGGTTCCTTTGTGCCTTGGTAGCAGTCTTGTGCACATCACTGCAACAAATTTCTATAGGTTCATTACAAAAGAAGTACTCAATAGGATCCTTTGAATTACTCAGCAAGACAGCTCCCATACAAGCACTTTCTCTTCTAACAGTTGGCCCATTTATTGACTACTGCCTCACAAGCAAATCTATACTGAATTACAGCTACACTTTCAACGCGTTTAGTTTCATAGTACTGTCATGCTCCCTTGCTGTGTTCTGCAACATCAGTCAATATCTGTGCATTGGGCGCTTCTCGGCCGTGTCGTTCCAGGTGTTAGGTCATATGAAGACGGTATGCGTGTTGACATTGGGGTGGCTGCTCTTTGATTCAGAGATGACATTGAAGAACATATCAGGAATGGTTCTTGCTGTTGTTGGGATGGTGATTTATAACTGGGCAGTTGAGATTGAGAAGCAAGGCAATGCAATGGCTGTCCCTCAAACAAAGAGCCCACTTTCAGATGAGGAGTTGATGCTGTTGAAGGAGGGAATTCAGGAGAGTGGCTTGAGAGATGAAGAGCTTGGTCATGTTCAAAAATAA 2487 44.19 MPLTLIGVGLRFNLGISIAVTLMASNSTKDVAADEKTASSDNKSAKSETIKSETTKSETSSAEHQPDKPKAPSASLPEFPPNPFDFSAMTGLLNDPSIQELASQIAKDPAFTQMASELQKNFHGASAQQGIPQFDTQQYYSTMQQVMQNPQFMSMAERLGNTLMQDPSMSSMLETFANPSNKEQLEERMTQIKQDPTLKPILDEIETGGPAAMMRYWNDRDVLKKLGEAMGFAVNGEDGANAESSVADDSEEVGNDDESIVHQTASVGDVEGLKNALAAGENKDEEDSEGRTALHFACGYGEAKCAQILLEAGVKVDALDKNKNTALHYAAGYGRKECVALLLENGAAHSPKLGWKDPHRCCQAKQPTRGAQIAREGRFPVTFEATGKILCHNSSTHATGTGISMILALSTFENATAYFNKTQLKKPRGELPLRVDFAATILGSKGSNFEDLRTFCSLMNLGAISLSKCFDLDLKKKKKKKKMLMEERKSSSVSDVGAWGMNIISSVGIIMANKQLMSQTGFAFSFATTLTGFHFSATAMVGWISNATGYSESKSVPIWELLWFSIIANTSIAAMNFSLMLNSVGFYQISKLSMIPVVCVMEWILHGKQYSREVKMAVAVVVVGVGVCTVTDVKVNAKGFLCALVAVLCTSLQQISIGSLQKKYSIGSFELLSKTAPIQALSLLTVGPFIDYCLTSKSILNYSYTFNAFSFIVLSCSLAVFCNISQYLCIGRFSAVSFQVLGHMKTVCVLTLGWLLFDSEMTLKNISGMVLAVVGMVIYNWAVEIEKQGNAMAVPQTKSPLSDEELMLLKEGIQESGLRDEELGHVQK 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1488160 1498124 - CmaCh02G003140.1 Cma02g00314 288065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00314 828 Gene3D - 138 368 IPR036770 -
Cma02g00314 828 Pfam Triose-phosphate Transporter family 506 780 IPR004853 -
Cma02g00314 828 ProSiteProfiles Ankyrin repeat region circular profile. 322 347 - -
Cma02g00314 828 PANTHER SOLUTE CARRIER FAMILY 35 488 803 - -
Cma02g00314 828 ProSiteProfiles Ankyrin repeat region circular profile. 289 321 - -
Cma02g00314 828 ProSiteProfiles Ankyrin repeat profile. 289 321 IPR002110 GO:0005515
Cma02g00314 828 SUPERFAMILY Multidrug resistance efflux transporter EmrE 702 781 - -
Cma02g00314 828 MobiDBLite consensus disorder prediction 235 256 - -
Cma02g00314 828 MobiDBLite consensus disorder prediction 34 65 - -
Cma02g00314 828 Pfam Ankyrin repeats (3 copies) 262 347 IPR002110 GO:0005515
Cma02g00314 828 MobiDBLite consensus disorder prediction 29 91 - -
Cma02g00314 828 PANTHER UDP-GALACTOSE TRANSPORTER 2-LIKE 488 803 - -
Cma02g00314 828 SUPERFAMILY Ankyrin repeat 249 348 IPR036770 -
Cma02g00314 828 ProSiteProfiles Ankyrin repeat profile. 322 347 IPR002110 GO:0005515
Cma02g00314 828 SMART ANK_2a 289 318 IPR002110 GO:0005515
Cma02g00314 828 SMART ANK_2a 256 285 IPR002110 GO:0005515
Cma02g00314 828 SMART ANK_2a 322 353 IPR002110 GO:0005515
Cma02g00314 828 Pfam STI1 domain 188 231 IPR041243 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00314 - - - cmos:111449110 619.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00314 Cma-Chr2:1488160 Cma09g00006 Cma-Chr9:34771 1.52E-176 dispersed
Cma20g00490 Cma-Chr20:2386757 Cma02g00314 Cma-Chr2:1488160 5.27E-60 dispersed
Cma11g01298 Cma-Chr11:8646733 Cma02g00314 Cma-Chr2:1488160 5.59E-140 wgd
Cma02g00314 Cma-Chr2:1488160 Cma20g00696 Cma-Chr20:3189782 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g332 . . . . . Bpe12g00164 . . . . Cma02g00314 . Car02g00195 Car20g00595 Sed01g0615 . . Bhi05g01518 Tan02g0522 Cmetu05g1570 Lac12g0422 Hepe02g0332 . . Cla02g00315 Cam02g0322 Cec02g0323 Cco02g0325 Clacu02g0314 Cmu02g0313 Cre02g0645 Cone12ag1280 Cone8ag1351 Cone3ag1265 . . Csa07g00229 . . Blo04g00617 Blo13g00584 . . Bpe15g00922 . Bma03g00654 Bma08g00700 . Cmo02g00308 . . . . . . Cpe05g01326 . . . . . . . Cla02g01042 . . . . . . Lsi11g01322 . Chy01g00551 Cme11g01009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001783 1 3 2 2 2 1 4 1 1 2 2 2 4 2 2 4 1 4 2 1 2 2 2 2 2 2 2 4 3 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00314 Cma_Chr02 FPKM 43.675934 44.342129 58.791485 55.870174 68.093803 80.744072 71.947754 88.878311 93.562996 86.320709