Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00318 ATGGGGGAATTTGAAGATGAGAGCCTCGTTAGTCCTTCATCATTAACTAGAAAGAACTTTTCTGTTGAGGGTCCTTCGCATTCTTCTTCATTGCCTGGTAGTACGCAGAAATTTTGTTATAGTAACATGAAGAACAGGGTGTTTCGCAGCATTAAGATCGTCGTTTTCTCGGCTAAAATCAACTGTCTCATGCCTTTTGGGCCTTTAGCAATAGTAGTCAGCAATTTATCTGGTCACCATGGTTGGGTCTTCCTTTTAAGCTTGTTGGGGATCATACCTCTCGCCGAGCGTTTGGGTTATGCAACCGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATACGCATTGCGAAGAGGAATGATACGGGTTGTTCAACAGTCATTGTTAGGTTCAATTTTGTCAAATATGTTGTTAGTACTTGGATGTGCCTTCTTTGCTGGTGGAGTTGTGGTTTCGAAGAGGGAGCAGGTCTTCAATAAGGCAGCTGCTACAGTGAATTCTGGATTGCTATTAATGGCAGTAATGGGACTTCTATTTCCTGCTGTCCTTCGTTCCACACATACAGAGTTGCACTCTGGAAAGTCTGAGTTGGCTCTTTCGAGATTTAGTAGCGGCATTATGTTGGTTGCGTATGCTGCCTATCTTGTTTTTCAGCTGAAAAGCGACAAGAACTTATATCTACCGGTTGATGAGGCGGTTACTGATGAAAATTATGATGATGATGATGAAGAAGCTCCTGAGATTTCTATGTGGGAATCCATTACTTGGCTGTCTATCTTGACCATTTGGATCTCTGTCCTCTCTGAATACTTGGTTAATGCAATAGAGGGGGCGTCGGTTGCCATGAACATACCGGTAGCGTTCATTAGTGTTATCCTACTACCCATTGTTGGGAATGCTGCAGAGCATGCAGGAGCCATCATGTTTGCCATGAAAGACAAGCTTGACATTTCTTTGGGAGTCGCGATAGGATCGTCTACACAGATATCTATGTTCGGGATTCCTTTTTGTGTGGTCATTGGTTGGATCATGGGTTGCCCTATGGACTTGAATTTTCAACTCTTCGAGACTGCCACGCTTTTCATAACGGTCATTGTCGTAGCCTTCATGTTGCAGGACGGAACATCTAATTACCTCAAAGGACTGATGCTTATTCTCTGCTACCTGATAGTAGCTGCGAGTTTCTTTGTACATATTGATCCAGCTTCAGTTGAAGATAAACCCCGAAAACATCGTGGATGA 1296 43.13 MGEFEDESLVSPSSLTRKNFSVEGPSHSSSLPGSTQKFCYSNMKNRVFRSIKIVVFSAKINCLMPFGPLAIVVSNLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGVVVSKREQVFNKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEAVTDENYDDDDEEAPEISMWESITWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVEDKPRKHRG 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1525162 1531480 - CmaCh02G003180.1 Cma02g00318 288069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00318 431 TIGRFAM caca2: calcium/proton exchanger 49 414 - -
Cma02g00318 431 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 426 - -
Cma02g00318 431 TIGRFAM cax: calcium/proton exchanger 64 414 IPR004798 GO:0006816|GO:0015369
Cma02g00318 431 Pfam Sodium/calcium exchanger protein 82 237 IPR004837 GO:0016021|GO:0055085
Cma02g00318 431 Pfam Sodium/calcium exchanger protein 275 411 IPR004837 GO:0016021|GO:0055085
Cma02g00318 431 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 3 426 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cma02g00318 431 Gene3D - 258 415 IPR044880 -
Cma02g00318 431 Gene3D - 110 253 IPR044880 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00318 Cma-Chr2:1525162 Cma06g00684 Cma-Chr6:3411459 0 dispersed
Cma02g00318 Cma-Chr2:1525162 Cma20g00699 Cma-Chr20:3216684 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00318 K07300 - csv:101215915 755.747