Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00321 ATGGCCGGCATTGTCAAGGAGATCCTGGCAAGGCCCATCCAACTCGCCGACCAGGTAACCAAAAACGCCGATTTCGCCCAATCCTTCAAGCAAGAATGCATCGAACTCAAAACCAAGACCGAAAAACTCGCCGCCCTCCTCCGCCAAGCCGCCCGCGCCAGCAACGACCTCTACGAGCGTCCCACTCGCCGCATCATCGACGACACAGAGCAAGTTCTCGACAAGGCTCTCATTCTCGTCCTCAAATGCCGCGCCAATGGCATCATGAAACGCATGTTCACCATAATCCCCGCCGCCGCATTCAAAAAAATCTCCACACAACTCGAAAACTCCATCGGCGATGTCTCTTGGCTCCTCCGTGTCTCCGCCCCTGCCGAGGATCGCGATGATGAATACCTCGGCCTCCCTCCGATCGCCTCCAACGAACCGATTTTAGGTTTAATTTGGGAACAGGTAGCGATCCTTCACACGAGTACCTTAGAGGAACGATCCGATGCTGCGGCTTCTCTGGCTTCATTGGCTCGCGACAATGATCGGTATGGGAAATTGATTATTGAAGAAGGAGGCGTTCCGCCGCTGCTGAAATTAGCCAAGGAAGGGCGGCTGGAAGGCCAGGAACACGCCGCGAGGGCCATCGGACTATTAGGTCGAGATTCCGAAAGCGTCGAACACATTGTGAATTGCGGCGTTTGTTCGGCGTTCGCGAAAATTCTCAAAGATGGACATATGAAGGTTCAATGCGTTGTGGCTTGGGCCGTTTCAGAAATGGCTACTCATCATCGCAAATGTCAAGATCATTTCGCGCAGAACAATGTGATTCGGCTACTCGTCAGCCATCTCGCGTTCGAAACGATTCAAGAACACAGCAGGTACGCCATTCATACCAAGCAGCAAATGTCGATTCATTCGGTGTTGATGGCTAATGGTTGTAATAGTTCTGATCATAATGTGAAATCTCGACATGAAGAAGATGATAAACGTACGAATAGTTGTATGAATCATCCAACTGGGAATCAATTATCTAGCCAAATGCATAATGTAGTTACCGATACATTGGCTATGAAGAATCCTGTAAAGGGTCAGCACAATGCGCAGGAATTGCAAAACTCGCACAAGGCGGGGAATCATCACGCGATGGGGCGGCCGCATCACGCGGCATTGTCAGGGGCAAGCATAAAGGGAAGGGAATATGAAGACCCTGCAACAAAAGCTCAAATGAAAGCCATGGCTGCAAAAGCTTTATGGCATCTCTGCAAAGGGAATGTCAACATTTGCCGTAACATTACAGAATCAAGAGCTCTGTTATGCTTTGCAGTTCTATTAGAGAAGGGCCCTGAAGATGTGAGGTACTATTCCGCTATGGCATTGATGGAAATCACAGCGGTAGCCGAGCAGAATGCCGAGCTGCGTCGATCTGGGTTCAAGCCTACTTCACCAGCAGCCAAGGCTGTTGTTGAACAGCTACTGAAAATCGTCGAGAAGGAGACTTACGATCTGCTTATTCCTTCAATCATAGCCATTGGTAACTTGGCTAGGACGTTCAGAGCAACCGAAACGAGGATGATCGGACCGCTCGTGAAGCTGCTCGACGAAAGGGAAACGGAGGTTTCGATGGAGGCAGTGATTGCACTTAACAAATTCGCCTGTCCTGAAAACTTTCTCCACGACAATCATTGCAAAGCCATCATAGAAGCAGGAGGAACAAAGCACTTGATCCAACTTGTTTATTTTGGTGAACAAATGGTTCAAATCCCTTCATTGATTCTTCTGTGCCACATAGCTTTACATGTCCCTGATAGTGAGACGCTAGCTCAAGAAGATGTACTGATTGTGCTGGAATGGTCTTCAAAACAGGGCCACTTAGTGGAAGAACAAAACATAGAAACTATACTGCCGGAAGCCAAAAGTAGATTGGAACTGTATCAGTCCAGAGTTTCAAGAGGATATCATTGA 1953 48.59 MAGIVKEILARPIQLADQVTKNADFAQSFKQECIELKTKTEKLAALLRQAARASNDLYERPTRRIIDDTEQVLDKALILVLKCRANGIMKRMFTIIPAAAFKKISTQLENSIGDVSWLLRVSAPAEDRDDEYLGLPPIASNEPILGLIWEQVAILHTSTLEERSDAAASLASLARDNDRYGKLIIEEGGVPPLLKLAKEGRLEGQEHAARAIGLLGRDSESVEHIVNCGVCSAFAKILKDGHMKVQCVVAWAVSEMATHHRKCQDHFAQNNVIRLLVSHLAFETIQEHSRYAIHTKQQMSIHSVLMANGCNSSDHNVKSRHEEDDKRTNSCMNHPTGNQLSSQMHNVVTDTLAMKNPVKGQHNAQELQNSHKAGNHHAMGRPHHAALSGASIKGREYEDPATKAQMKAMAAKALWHLCKGNVNICRNITESRALLCFAVLLEKGPEDVRYYSAMALMEITAVAEQNAELRRSGFKPTSPAAKAVVEQLLKIVEKETYDLLIPSIIAIGNLARTFRATETRMIGPLVKLLDERETEVSMEAVIALNKFACPENFLHDNHCKAIIEAGGTKHLIQLVYFGEQMVQIPSLILLCHIALHVPDSETLAQEDVLIVLEWSSKQGHLVEEQNIETILPEAKSRLELYQSRVSRGYH 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1549047 1550999 - CmaCh02G003210.1 Cma02g00321 288072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00321 650 MobiDBLite consensus disorder prediction 312 342 - -
Cma02g00321 650 Pfam Armadillo/beta-catenin-like repeat 183 214 IPR000225 GO:0005515
Cma02g00321 650 Pfam Armadillo/beta-catenin-like repeat 219 257 IPR000225 GO:0005515
Cma02g00321 650 MobiDBLite consensus disorder prediction 315 330 - -
Cma02g00321 650 PANTHER ARMADILLO REPEAT ONLY 4 1 650 - -
Cma02g00321 650 SUPERFAMILY ARM repeat 153 612 IPR016024 -
Cma02g00321 650 Gene3D - 391 625 IPR011989 -
Cma02g00321 650 MobiDBLite consensus disorder prediction 362 384 - -
Cma02g00321 650 Gene3D - 147 319 IPR011989 -
Cma02g00321 650 Coils Coil 36 56 - -
Cma02g00321 650 SMART arm_5 421 461 IPR000225 GO:0005515
Cma02g00321 650 SMART arm_5 218 258 IPR000225 GO:0005515
Cma02g00321 650 SMART arm_5 176 217 IPR000225 GO:0005515
Cma02g00321 650 SMART arm_5 555 595 IPR000225 GO:0005515
Cma02g00321 650 Gene3D - 4 121 IPR036537 GO:0007166
Cma02g00321 650 PANTHER ARMADILLO REPEAT ONLY 1 1 650 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00321 - - - csv:101216019 1084.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00321 Cma-Chr2:1549047 Cma07g00424 Cma-Chr7:1819468 0 dispersed
Cma02g00321 Cma-Chr2:1549047 Cma03g00681 Cma-Chr3:5634137 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g134 . . . . . . . . . . Cma02g00321 . Car02g00202 Car20g00666 . . . . . . . . . . . . . . . . . . . . . Lsi10g00476 . Chy11g00278 . . . . . . . . . Sed01g0209 Cmo02g00315 . . . . . Cpe16g00305 Cpe05g01320 Bhi10g01872 Tan05g1164 Cmetu11g2261 . Hepe08g0276 . . Cla02g01149 Cam02g1226 Cec02g1233 Cco02g1275 Clacu02g1206 Cmu02g1175 Cre02g1484 . Csa02g01370 . Cme11g00398
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008024 0 1 2 1 2 1 3 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00321 Cma_Chr02 FPKM 0.0 0.0 0.047208 0.0 0.231767 0.231698 0.088839 0.073127 0.0 0.0