Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00327 ATGGCGTCGAAGGCCTACAGGATTTTCTTTTTTGCACTCTTCCTCCTTGCGTCGCCTTTTCTCCAAGTTGTTAGATGTCAATCAGATGCGAGTGTGGAATCTGAAGAGGCCGTTAAAGATATCTCTGACTTGGGGACTGTTGGGGAGGATGAGCAAGATTTTGGTGACGGGAGCTTTAGCCCGGCTCCAGGGGTTGATACCGTGTGTGTTTTCCCCAAAAATAGCGCACGTATTGTGGTGGCAGGAGAAGAGGCTGAGCTATTAGCAGGGGTGAAAAATGATGCCAGTGTTCATTACACTTTCGATCACCGAGTACTAATTCAAAATCTTACCGCACAGCCGTATAATAATGCATCAGTACCAGCATCCTCACAAGCAACTTTCCCGTACTTTTTTGCTGTCAGCAAATATCTTCAGCCTGGGAATTTTGATATTGTTGGAACCATCATTTATGAGATGGATCAGCATCCATATCAGAGTACATTCTTCAATGGTACCATTGAAGTTGCTGAAGCCAGTGGTTTTCTCAGCATTGAATCTGTATTTCTCGTTACCCTTGGAATTGCACTAATCGTGCTGCTTGGCTTATGGATTCATGGGCAAATACAGAATCTTCCCAAGAAAACCAAGAGGGCTCCAAAGGTTGAATTTGGAACGAAGGCTTCAGATGCATCATTAGACGAATGGCTTGAGGGCACTGCATATTCTCAGTCATCGTCAAACAAATTAAAGAAAAAGAAGTAA 744 43.82 MASKAYRIFFFALFLLASPFLQVVRCQSDASVESEEAVKDISDLGTVGEDEQDFGDGSFSPAPGVDTVCVFPKNSARIVVAGEEAELLAGVKNDASVHYTFDHRVLIQNLTAQPYNNASVPASSQATFPYFFAVSKYLQPGNFDIVGTIIYEMDQHPYQSTFFNGTIEVAEASGFLSIESVFLVTLGIALIVLLGLWIHGQIQNLPKKTKRAPKVEFGTKASDASLDEWLEGTAYSQSSSNKLKKKK 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1600581 1605134 - CmaCh02G003270.1 Cma02g00327 288078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00327 247 Pfam Translocon-associated protein (TRAP), alpha subunit 31 230 IPR005595 GO:0005789
Cma02g00327 247 PANTHER TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT 5 247 - -
Cma02g00327 247 PANTHER - 5 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00327 K13249 SSR1; translocon-associated protein subunit alpha - csv:101214090 386.726
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00327 Cma11g01395 CCT
Cma02g00327 Cma19g00724 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01395 Cma-Chr11:9188254 Cma02g00327 Cma-Chr2:1600581 5.44E-116 wgd
Cma19g00724 Cma-Chr19:7317818 Cma02g00327 Cma-Chr2:1600581 7.93E-121 wgd
Cma02g00327 Cma-Chr2:1600581 Cma20g00769 Cma-Chr20:3631085 1.11E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g113 . . . . Bpe07g00487 . Bma05g00414 . Cmo19g00733 . Cma02g00327 . Car02g00208 . Sed05g2236 Cpe04g00576 Cpe15g00579 Bhi05g01745 Tan02g0712 Cmetu01g0699 . Hepe02g0443 . . . . . . . . . Cone12ag1213 Cone8ag1265 . Cone10ag1183 Lsi10g00464 Csa07g00080 Chy11g00293 Cme01g01284 . . . . . . . . Sed01g0219 Cmo02g00322 Cmo20g00768 Cma11g01395 Cma19g00724 . Car19g00553 Cpe16g00298 Cpe05g01312 Bhi10g01888 Tan05g1184 Cmetu11g1977 . Hepe08g0943 . . Cla02g01111 Cam02g1183 . . Clacu02g1173 Cmu02g1133 . . Csa02g01356 Chy01g00697 Cme11g00415
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001891 0 2 1 3 2 2 3 3 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 1 2 5 2 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00327 Cma_Chr02 FPKM 1.415182 2.077531 5.254013 5.71879 1.977816 2.540173 1.998601 3.411677 3.66793 4.406665