Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00328 ATGTCGGGCATGGGAGATGGATACGTCGGCACTGCCCAAGACGCCGTCAGGATTCGAAGACTCGAGAAGCAGAGGGAAGCCGAGCGCCGGAAAATCCAGGAGCTCAAGGCCAAAACTGCCTCCGATAAAGGCCAGCCTGGTCTCCTCCAATTCGGCTCCAGTACCTCTGAGATTCTTGAGACAGCATTCAAGAAGGAAACTGTTGGTCTGGTGACGAGAGAAGAGTATGTTGAGAAGAAAGTGAACATTCGAAACAAATTTGAGGAGGAGGAGAAGGAGAAACTTCAAAAGCTACAACGAGAGGAAGAGGAACTCCAATTGCAAAAACGCAGGAAAAGGAAAATAAGGGGGAATTCACGTTTGTCTTTCTCTGATGATTTTGAGAATGGAAGCGATGAGGACGATGGTAATAAAAATTTGGAGCCAAGGAAGCTCGGGCGTGATAAACTTGGGAAAGATCCTACAGTGGAGACTAGCTTTTTGCCTGATAGTGAGCGGGAAGCTGAGGAGCAAGCTGAGCGTGAAAGGCTGAAGAAACAGTGGCTTCGGGAGCAGGAGCAAATTCGAAGCGAGCCACTTCAAATTACTTACAGTTATTGGGATGGAACTGGGCATAGACGAGTCATCCAGGCACGAAAAGGTGATAGAATTGGAGAGTTTCTGAGGGCTGTACAGCAGCAACTCGCTCCCGAGTTTCGGGAGATTAGGACTACCTCGGTAGAGAATTTGCTCTATGTGAAGGAGGATCTTATAATACCACACCAACATAGCTTCTATGAGCTTATTGTGAACAAGGCTAGAGGAAAAAGTGGCCCGCTTTTCCACTTTGATGTACACGAGGATGTTCGGACAACTGCTGATGCGACAATCGAGAAGGATGAGTCTAGGAAGATGCCTCTTCACAATCTCATGCTGGGAAAGTTGTTGAGAGGCACTGGTACGAGAAGAATAAGCATATCTTTCCTGCTTCAAGATGGGAGATATACGATCCAACCAAGAAATGGGAGCGGTACACCATCCACGGGGATTGATTCTATGGCATATAGCACGGGTAGTATGATTTATGCCTTGAATCCCAAGTTTTTTTCTTACCTCTGCTATATTATGCACGCTTCAGTATGTTTGAAATAA 1131 46.51 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKAKTASDKGQPGLLQFGSSTSEILETAFKKETVGLVTREEYVEKKVNIRNKFEEEEKEKLQKLQREEEELQLQKRRKRKIRGNSRLSFSDDFENGSDEDDGNKNLEPRKLGRDKLGKDPTVETSFLPDSEREAEEQAERERLKKQWLREQEQIRSEPLQITYSYWDGTGHRRVIQARKGDRIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTTADATIEKDESRKMPLHNLMLGKLLRGTGTRRISISFLLQDGRYTIQPRNGSGTPSTGIDSMAYSTGSMIYALNPKFFSYLCYIMHASVCLK 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1612441 1615914 - CmaCh02G003280.1 Cma02g00328 288079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00328 376 MobiDBLite consensus disorder prediction 121 172 - -
Cma02g00328 376 PANTHER BNAA04G11980D PROTEIN 210 296 - -
Cma02g00328 376 PANTHER BNAA04G11980D PROTEIN 1 209 - -
Cma02g00328 376 MobiDBLite consensus disorder prediction 133 172 - -
Cma02g00328 376 PANTHER XAP-5 PROTEIN-RELATED 210 296 IPR007005 GO:0005634
Cma02g00328 376 PANTHER XAP-5 PROTEIN-RELATED 1 209 IPR007005 GO:0005634
Cma02g00328 376 Coils Coil 73 118 - -
Cma02g00328 376 Coils Coil 18 38 - -
Cma02g00328 376 Coils Coil 165 185 - -
Cma02g00328 376 Pfam XAP5, circadian clock regulator 90 292 IPR007005 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00328 K13119 FAM50, XAP5; protein FAM50 - csv:101213848 506.523
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00328 Cma20g00769 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00328 Cma-Chr2:1612441 Cma20g00769 Cma-Chr20:3631085 1.75E-170 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g112 . Blo15g00654 Bda06g00967 . Bpe07g00488 . . . . . Cma02g00328 Cma20g00769 Car02g00209 Car20g00672 . . . . . . . . . . . . . . . . . . . . . . . Chy11g00294 . . . . . . . . . . Cmo02g00323 Cmo20g00769 . . . . Cpe16g00297 Cpe05g01311 Bhi10g01890 . . . Hepe08g0944 . . Cla02g01112 Cam02g1184 . . Clacu02g1174 Cmu02g1135 . . Csa02g01355 . Cme11g00416
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008443 1 2 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00328 Cma_Chr02 FPKM 15.160589 19.074663 17.245821 15.713572 18.208002 14.937402 14.680765 23.761883 25.339632 25.443068