Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00329 ATGTCTCCGGCAGCCATGGATCAACGACGCGACGCTCCAATTCCGAATCCAGTCACACCCTCCATTGAGCTTTCAGGGCACCCAAATCGCTCCCAATCCAGTTCCAGGTCTGAATGTGAATTGAAGGATTCTGCAGCTGCTAGAACAGTTCAGAAGGCTGACAGAGAGAAACTAAGAAGAGACCGATTGAATGAACAATTTGTTGAGCTTGGAAGTGTTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCATTTTAATGGATACAATTCAGTTGCTGAAGGATTTGACATCTCAAGTAAACAAACTGAAAACTGAGTATGCAACATTAACAGAAGAATCGCGTGAGCTAGCCCAGGAAAAGAATGATCTAAGAGAAGAGAAGGCCTCACTCAAATCTGATATTGAGAATCTTAATTCTCAGTATCAGCAAAGACTCATGGCTACTAACTCTATTGTCATGGCCCCTGCTCCCTTTCCATTTCCAATGCCTCCAGCGCCATTTCCTCTACATCCAACCTCGCAACCTTACATGTTCTTCGGAAATCAAAATCCTAGAGTGATAGCAAACCCATGTTCCCCGTTCGTCCAATACATAGCTCATAATTCCATGGCTGAGCAGCAGGCCTCCCGAAATGCACCGCCTTTCGTTCATCCAAGCAAGCATGATTCGTCGTTCGAACAATCGAACGACACGAACGGGAACGAAAATAATCCATCAGAAGTAGAACTAGAGGAGAGTTCTTCAAGTGAATGTTCTTTATCTCGTAGTTTAGAGGCTAATTCGTTTAGTAGCACGCTTAATGGATGA 813 44.03 MSPAAMDQRRDAPIPNPVTPSIELSGHPNRSQSSSRSECELKDSAAARTVQKADREKLRRDRLNEQFVELGSVLDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTEYATLTEESRELAQEKNDLREEKASLKSDIENLNSQYQQRLMATNSIVMAPAPFPFPMPPAPFPLHPTSQPYMFFGNQNPRVIANPCSPFVQYIAHNSMAEQQASRNAPPFVHPSKHDSSFEQSNDTNGNENNPSEVELEESSSSECSLSRSLEANSFSSTLNG 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1617043 1620855 + CmaCh02G003290.1 Cma02g00329 288080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00329 270 MobiDBLite consensus disorder prediction 223 270 - -
Cma02g00329 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 115 IPR036638 GO:0046983
Cma02g00329 270 Pfam Helix-loop-helix DNA-binding domain 51 97 IPR011598 GO:0046983
Cma02g00329 270 PANTHER TRANSCRIPTION FACTOR BHLH121 28 249 IPR044579 GO:0003700|GO:0055072
Cma02g00329 270 MobiDBLite consensus disorder prediction 22 40 - -
Cma02g00329 270 Gene3D - 46 126 IPR036638 GO:0046983
Cma02g00329 270 CDD bHLH_AtILR3_like 52 126 - -
Cma02g00329 270 MobiDBLite consensus disorder prediction 207 270 - -
Cma02g00329 270 PANTHER TRANSCRIPTION FACTOR BHLH121 28 249 - -
Cma02g00329 270 SMART finulus 53 103 IPR011598 GO:0046983
Cma02g00329 270 MobiDBLite consensus disorder prediction 1 53 - -
Cma02g00329 270 Coils Coil 87 142 - -
Cma02g00329 270 Coils Coil 46 66 - -
Cma02g00329 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 97 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00329 - - - cmax:111500006 484.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00329 Cma-Chr2:1617043 Cma07g00427 Cma-Chr7:1835142 1.25E-67 dispersed
Cma02g00329 Cma-Chr2:1617043 Cma03g00685 Cma-Chr3:5646124 1.24E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g111 . . Bda06g00968 . Bpe07g00490 . Bma05g00413 . . . Cma02g00329 . . . . . . . . . . . . . . . . . . . . Cone12ag1212 Cone8ag1264 . . Lsi10g00463 . Chy11g00295 . . . . . . . . . Sed01g0221 . . . . . . . Cpe05g01310 Bhi10g01891 Tan05g1191 Cmetu11g1417 . Hepe08g0945 . . Cla02g01113 Cam02g1185 . . Clacu02g1175 Cmu02g1136 . . Csa02g01354 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001472 1 2 3 3 2 2 2 2 2 2 2 2 3 1 2 3 2 4 3 2 2 2 2 2 2 2 2 6 5 2 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34429 PF00010 HLH 3.50E-08 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00329 Cma_Chr02 FPKM 0.0 0.0 0.67449 0.0 7.737454 8.483315 7.026256 0.229608 0.0 0.502202