Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00333 ATGGAGGTCTCCTTCTCTTCCAACCCTCAATTACTCACCTTCAATCCATGTCTTCCTCTCAATTCCTCTTCCTCCTTCTCCTACACTCGCCTCCGCTTCGTTCGCCGCCAGTTTCTTGGTTCTGCTCATAATCTTCGCCCGCCGGATGTTCTGCGCTCTCGTCGTAGGTGCAGGAAGGTTGGCTTCCTTGTTCAGTCTCCGAGATGCATGTTTCGTGCTGCCTTCACTTCCAATCCGGTTCTCATCGTTGTTGCTGTGGTTACTTTCTCGGCTGTTTCGTTTATCTATATGAACTTAAATAAGAGGAAGAAGAATGCGGTTGAGCGTTCTCAATCTCCAAAGCTTGCCTTATCTCAACTAGGTAGAGGCGTCAACTGGTCCGTCGATGATCAGGTAATGGGCTTTAGGGATCATCATGGTGACTTCTTAGAGCAGAACATAGCCGTAAAGGATAGAACTGAAGAGAGAAGTAATTCTGGGGAAGAAGAGACTGTTCTGCATCTTCAAACATCAGTTTTGTCACATGAGGCCAATGTCACCGAAACATTGCCGCCATCTGTTGAATTTACCACTTCTAGGGATAGTGGTTCTCTGTTTTCAGATGAAACTGAAGCAGCAGATCCTTCTCTTCCTTCTGATATCTTTGAATCTGGCGTCCTGCAGCCTCTTATTTTTGCCAACGACATGACTGACTTGCAGCTAAATGTATCTGATGTCAAATCCCACTCTGACTTGGCCGTTGTGCTTGATACAACTGAGCTTCCGCCTGTTTCTGGTCCTTTATATAGTGTATATAATCAAGTGACTCAAGATTTCAAAGCAGATGGCGAGCTTCTAAAAGTGGAGAAGTTAATCGGTTCCAGTTTTCTAATTGAAGAACCGTCTAGAGAAGATATTTACATGTTCTATGAAGATACAAAGTCAAGTAGTCAAATGGCAACTTCTTCTCGTACTTCTCATCTATACAACCAAAAATTTTCTTCTGTGACGATTAACGGTATCTCAAGAGGAGCAGAATTAATGTTGGAGGATTCTCTTCAAATTGCAGGTAATGACTTCAATAGCGAATGTTTGTACAACTTAGGATATGTTGAAAGAAGAGAACCTGTTGCAAGATATAAGGGAGGTTCTTCAGGGGACAAAAATAAATCTGGAGGGGGCAACAATATTGTAGGACACGGAGAAAGAAAAGAAGCCAGCCTGCATAAAGAGAAAGTTGTGAATGGGTTACCCTATCCAAATGGGAAGCATGTTCATAACAAAAATCTTCATGTAGATCAATATAAAGCGTACAATCAATGTCTGAAAGGTGGAAGGTTGAACGAATGTATCAAAATACTTCAGGATATGGAAAAAGCAGGCTTATTGGACATGAATAAGATTTATCATGGAAAGTTTTTCAATATTTGCAAGAGTAAAAAGGCTGTTCAGGAAGCTTTTCAGTACACCAAACTTATTGCAAACCCCACATTGAGTACATTTAATATGCTCATGTCTGTATGTGCAAGTTCTCAAGATTCTGACAGAGCTTTTCAAGTTGTGCGGCTTGTCCAGGAGGCTGGAATGAAAGCAGATTGCAAACTATACACTACTTTAATCTCAACATGTGGCAAAAGTGGAAAAGTGGATGCAATGTTTGAGGTATTCCACCGAATGGTTAATGCTGAAGTGGAACCTAATGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGGTCAAGTGGCCAAGGCATTTGGCGTATATGGAATAATGAGGTCAAAAAACGTGAAGCCAGACAGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAGTCAGGAGCAGTGGATCGTGCTTTTGATGTGCTGGCCGAAATGGGGGCTGAGCTACATCCTATAGAGCCTGATCATTTTACAATTGGTGCTTTGGTCAAAGCATGTGCAAATGCTGGTCAGGTTGATCGGGCAAAAGAAGTGTATAAGATGATCCATGATTGTAACATTAAGGGAACACCAGAGGTTTACACCATTGCTGTTAATTGTTGTAGTCAATCTGGTGATTGGGACTTTGCTTCCACTGTATATCAAGATATGACCAGGAAAGGAGTAAAACCTGATGAGATTTTTTTCAGTGCATTAATAGATGCGGCAGGCCATGCTGGTAAGCTGGATTCTGCTTTTGAAATCTTAGGAGAAGCCAAGACACTGGGGATACGTGTTGGCATTGTATCATATAGTTCGTTGATGGGTGCCTGTAGCAATGTGCGTATAGCTAAAAACTGGCAGAAGGCGTTGGAACTGTATGAGGATCTCAAGTCTACGAAATTGAGGCCAACTGTTTCAACTGTGAATGCATTAATAAATGCACTGTGTGATGGGGAACAACTACAAATGGCTATGGATATTCAGAGAGAAATGAAGGGATTAGGACTCTACCCTAACAACATTACATACTCTATACTTATGGCAGCAAGTGAAAGGAATAATAATTTAGAAATTGCCCTCGAACTCCTCTCTCAAGCCAAAGAGGATGGTGTTGCCCCAACTTTAACTATGTATAGGTGCATAATTGGCATGTGCTTACGAAGAGTTGCAGAGCCCTCTTCCCTTGATAGACCGCTCTTATCTCTTGACACTAGCTGGCCTCAAGTCGATAGTAAGTGGGCAGCACAGGCCTTAATGGTGTACCGGCAAATAATCGAAGCCAGAATTGTTCCGAGCATTGAAATCTTGTCTCAAGTTTTGGGGTGCTTGCAGATTTCTCATGATCCCTCCTTAAAACGTAGACTCATAGAAAACATTGGAGTAAGTGCTGACACATCAAGATCTTCAAATCTAAGCTCCTTGATAGATGGCTTTGGAGAATATGATCCTCGCGCATTTTCACTGTTGGAGGAAGCTGCTTCACTTGGAGTTGCTCCATTTGTATCCCTCAAGGGAAGTCCTATTGTTGTAGATGTCAAGGAGTTGCAGATTCATACAGCTGAGGTTTACCTGTTGACAGTTTTGAAAGGTCTCAAACATCGGCTTGCCGCTGGTTCAAAGTTACCGAACTTACTGATCTTACTGTCAGTTGAGACGACACAAATTCTCTCTTCCAAGGGCGAGAGGACCATTAACCTTGCTGGAAGGGTTGGACAAGCAGTTGCAGCATTGTTAAGAAGACTTGGACTTCCCTACCAAGGAAATGAATCAAGTGGAAAAATCAGAATCAATGGTTTAGCCTTGAGAAGATGGATGCAACCAAAACATTCCGATTCTCGAATCGGAAAACCTGGAGAGTTCAGCTTGTTTCAGTCACGTCTAGGAAAAGAAATAAGCCATCAGCAACGTAATATTCGCTCTGGGCATCTCTCACTGGATTAA 3354 42.37 MEVSFSSNPQLLTFNPCLPLNSSSSFSYTRLRFVRRQFLGSAHNLRPPDVLRSRRRCRKVGFLVQSPRCMFRAAFTSNPVLIVVAVVTFSAVSFIYMNLNKRKKNAVERSQSPKLALSQLGRGVNWSVDDQVMGFRDHHGDFLEQNIAVKDRTEERSNSGEEETVLHLQTSVLSHEANVTETLPPSVEFTTSRDSGSLFSDETEAADPSLPSDIFESGVLQPLIFANDMTDLQLNVSDVKSHSDLAVVLDTTELPPVSGPLYSVYNQVTQDFKADGELLKVEKLIGSSFLIEEPSREDIYMFYEDTKSSSQMATSSRTSHLYNQKFSSVTINGISRGAELMLEDSLQIAGNDFNSECLYNLGYVERREPVARYKGGSSGDKNKSGGGNNIVGHGERKEASLHKEKVVNGLPYPNGKHVHNKNLHVDQYKAYNQCLKGGRLNECIKILQDMEKAGLLDMNKIYHGKFFNICKSKKAVQEAFQYTKLIANPTLSTFNMLMSVCASSQDSDRAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAEVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHFTIGALVKACANAGQVDRAKEVYKMIHDCNIKGTPEVYTIAVNCCSQSGDWDFASTVYQDMTRKGVKPDEIFFSALIDAAGHAGKLDSAFEILGEAKTLGIRVGIVSYSSLMGACSNVRIAKNWQKALELYEDLKSTKLRPTVSTVNALINALCDGEQLQMAMDIQREMKGLGLYPNNITYSILMAASERNNNLEIALELLSQAKEDGVAPTLTMYRCIIGMCLRRVAEPSSLDRPLLSLDTSWPQVDSKWAAQALMVYRQIIEARIVPSIEILSQVLGCLQISHDPSLKRRLIENIGVSADTSRSSNLSSLIDGFGEYDPRAFSLLEEAASLGVAPFVSLKGSPIVVDVKELQIHTAEVYLLTVLKGLKHRLAAGSKLPNLLILLSVETTQILSSKGERTINLAGRVGQAVAALLRRLGLPYQGNESSGKIRINGLALRRWMQPKHSDSRIGKPGEFSLFQSRLGKEISHQQRNIRSGHLSLD 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1647891 1658400 + CmaCh02G003330.1 Cma02g00333 288084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00333 1117 Coils Coil 817 837 - -
Cma02g00333 1117 Pfam Pentacotripeptide-repeat region of PRORP 567 728 IPR033443 -
Cma02g00333 1117 TIGRFAM PPR: pentatricopeptide repeat domain 528 561 IPR002885 -
Cma02g00333 1117 TIGRFAM PPR: pentatricopeptide repeat domain 670 703 IPR002885 -
Cma02g00333 1117 TIGRFAM PPR: pentatricopeptide repeat domain 493 526 IPR002885 -
Cma02g00333 1117 TIGRFAM PPR: pentatricopeptide repeat domain 635 665 IPR002885 -
Cma02g00333 1117 TIGRFAM PPR: pentatricopeptide repeat domain 778 810 IPR002885 -
Cma02g00333 1117 TIGRFAM PPR: pentatricopeptide repeat domain 562 595 IPR002885 -
Cma02g00333 1117 Pfam PPR repeat family 774 819 IPR002885 -
Cma02g00333 1117 MobiDBLite consensus disorder prediction 373 393 - -
Cma02g00333 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 667 701 IPR002885 -
Cma02g00333 1117 MobiDBLite consensus disorder prediction 186 207 - -
Cma02g00333 1117 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 73 1117 - -
Cma02g00333 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 775 809 IPR002885 -
Cma02g00333 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 810 844 IPR002885 -
Cma02g00333 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Cma02g00333 1117 Gene3D Tetratricopeptide repeat domain 733 864 IPR011990 GO:0005515
Cma02g00333 1117 Gene3D Tetratricopeptide repeat domain 571 732 IPR011990 GO:0005515
Cma02g00333 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 560 594 IPR002885 -
Cma02g00333 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 632 666 IPR002885 -
Cma02g00333 1117 Gene3D Tetratricopeptide repeat domain 416 570 IPR011990 GO:0005515
Cma02g00333 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 737 774 IPR002885 -
Cma02g00333 1117 Pfam PPR repeat 529 554 IPR002885 -
Cma02g00333 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 525 559 IPR002885 -
Cma02g00333 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 702 736 IPR002885 -
Cma02g00333 1117 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 625 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00333 - - - csv:101204147 1814.28
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00333 Cma20g00774 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00333 Cma-Chr2:1647891 Cma08g00477 Cma-Chr8:2685312 2.31E-13 dispersed
Cma02g00333 Cma-Chr2:1647891 Cma20g00774 Cma-Chr20:3662123 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00333 Cma_Chr02 FPKM 0.922636 0.906373 2.931063 3.426149 34.092415 36.352802 37.359051 5.265522 5.123538 4.717893