Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00337 ATGGGAATCCGTTTGCCATCAGTACTTCTCAATGCCAAGCAGATTCTGAAAATTCAAGCTATGTCTGCCAAAAATCATTCTGACGTTCCCAAAGGCCACATTGCAGTCTACGTGGGAGAGATCCAAAGAAAGAGATTTGTAGTTCCTATATCATACTTGAAGCATCCTTCTTTCCAAGATCTGCTAAATAGATCAGAAGAAGAGTTTGGATTTTGCCATCCAATGGGCGGCTTGACGATTCCGTGCAGAGAAGATGCCTTCGTAAATCTCACTTCTAGGCGATACAAAATGAGTGGTCGATGGTTGAAAACAGAGGATATTGGGGATGTAAGCGGCTGTGGATCTCAGGAAGGTTGA 357 43.42 MGIRLPSVLLNAKQILKIQAMSAKNHSDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFQDLLNRSEEEFGFCHPMGGLTIPCREDAFVNLTSRRYKMSGRWLKTEDIGDVSGCGSQEG 118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1668082 1669233 - CmaCh02G003370.1 Cma02g00337 288088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00337 118 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 94 IPR003676 GO:0009733
Cma02g00337 118 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR22-LIKE 1 94 - -
Cma02g00337 118 Pfam Auxin responsive protein 13 91 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00337 K14488 SAUR; SAUR family protein - csv:105434422 180.644
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00337 Cma11g01404 CCT
Cma02g00337 Cma20g00777 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00337 Cma-Chr2:1668082 Cma20g00781 Cma-Chr20:3694490 6.73E-61 dispersed
Cma19g00709 Cma-Chr19:7242365 Cma02g00337 Cma-Chr2:1668082 3.24E-31 dispersed
Cma02g00337 Cma-Chr2:1668082 Cma02g00338 Cma-Chr2:1671360 1.73E-49 tandem
Cma11g01403 Cma-Chr11:9218676 Cma02g00337 Cma-Chr2:1668082 6.59E-34 wgd
Cma19g00718 Cma-Chr19:7293167 Cma02g00337 Cma-Chr2:1668082 2.89E-20 wgd
Cma02g00337 Cma-Chr2:1668082 Cma20g00777 Cma-Chr20:3683719 2.09E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g84 . . . . . Bpe12g00106 . . . Cmo11g01717 Cma02g00337 Cma20g00777 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00456 Csa07g00071 . . . . Bda15g01051 . . . . . Sed01g0233 . Cmo20g00776 Cma11g01404 . . . . . Bhi10g01905 Tan05g1204 . . . . . . . . . . . . Lsi11g01173 Csa02g01345 . Cme11g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000045 7 14 1 1 5 16 0 0 13 4 12 13 24 19 19 31 17 1 0 16 18 3 0 3 14 20 13 24 12 19 339
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00337 Cma_Chr02 FPKM 0.0 0.0 0.0 1.142334 0.0 0.0 0.0 0.0 0.0 0.0