Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00358 ATGGCGGCCGCCGCGCTCAACCTCCCTTCTCTCTCTTCCTCTCCCTCTCCTTCTCTCTCTCATCCCACTCATTTCCTTCCAACCCCTCTTTCCCTCTCCTCGAAATCTCTTCCGAAATCCCACTCATTCCATTCCCATTCCCTTCCCAAACCCCTCCTCGTCGCCGCCGTCGCCGCTGCCAAATCCCCCATCTCCCACTTCTTCTCCGATGACGATTCCGACGACAAGCCGCGTGAGGAGTGTGGCGTCGTCGGAATTTACGGCGACCACGAAGCCTCTCGCCTCTGCTATTTAGCCCTCCACGCTCTCCAACATCGCGGCCAAGAAGGCGCCGGTATCGTCTCCGTCAACGACGACGTCCTTCAATCCGTCACCGGCGTTGGCCTTGTCTCTGAGGTTTTCAATCAAACCAAACTCGATCAATTACCTGGCGATTCTGCTATTGGCCATGTTCGTTACTCCACGGCTGGAGCTTCCATGCTTAAGAATGTCCAACCCTTCGTTGCTGGATATCGATTCGGCTCTGTTGGGGTTGCTCATAATGGTAATTTGGTTAATTATGGTTCTCTTAGAGCTAAACTTGAAGATTCTGGTTCAATTTTCAATACTAGTTCTGATACTGAAGTTGTTCTTCACCTTATTGCAATTTCTAAACAAAGGCCCTTCTTATTGAGAATTGTGGATGCTTGTGAACAGCTTGAAGGAGCTTATTCAATGGTGTTTATTACAGAAGATAAATTGGTTGCTGTTCGTGATCCTTATGGATTTAGGCCTTTAGTTATGGGTAGAAGAAGTAATGGCTCTGTTGTGTTTGCTTCTGAAACTTGTGCTCTAGATTTAATTGAAGCCACATACGATAGAGAAGTGTTTCCTGGTGAAGTTTTAGTAGTTGATAAAAATGGGATTCAATCCCTTTGTTTAATGGCTCATCCACAGCCAAAATCATGCATATTTGAACACATATACTTTGCTCTACCGAACTCGGTTGTTTTCGGGCGTTCTGTCTACGAATCCCGCCGAGCATTCGGCGAGATACTTGCAACCGAAGCCCCTGTCGATTGTGATGTCGTGATAGCCGTACCAGATTCAGGAGTAGTAGCTGCTCTTGGCTATGCAGCCAAAGCTGGGGTTGCTTTCCAACAAGGGCTCATAAGGTCACATTACGTTGGGAGAACATTCATAGAGCCATCACAAAGGATTCGCGACTTCGGCGTAAAGCTAAAGTTGTCGCCGGTTCGAGCAGTGTTGGAAGGGAAGAGAGTCGTGGTTGTGGATGACTCGATTGTTAGAGGCACCACATCTTCAAAGATTGTGAGGCTGTTAAAGGAAGCAGGGGCTAAAGAAGTGCATATGAGGATAGCTAGCCCTCCAATTATAGGGTCATGTTATTATGGAGTTGATACCCCAAGTGCTGAAGAACTGATATCAAACAGGATGAGTGTTGATGAAATAAGAGAGTTTATAGGCTGTGATTCACTTGCTTTTCTGCCATTTGATAGCTTAACGAAGCTTTTAGGCAATGATTCTTCAAACTTTTGCTATGCTTGCTTTTCAGGGAACTACCCAGTTGAGCCAAGAGAAATCAAAGTGAAAAGGGTGGGAGATTTTGTTGATGATGGCTTGAATGGAAGCTTGGAATCCATTGATGGAGGATGGGTTCAAGCTAACAGACATCAAAATCTTGAAAATCATCTCAAAGTGGAGAAGGTTGGGGGCGTTTGA 1722 46.17 MAAAALNLPSLSSSPSPSLSHPTHFLPTPLSLSSKSLPKSHSFHSHSLPKPLLVAAVAAAKSPISHFFSDDDSDDKPREECGVVGIYGDHEASRLCYLALHALQHRGQEGAGIVSVNDDVLQSVTGVGLVSEVFNQTKLDQLPGDSAIGHVRYSTAGASMLKNVQPFVAGYRFGSVGVAHNGNLVNYGSLRAKLEDSGSIFNTSSDTEVVLHLIAISKQRPFLLRIVDACEQLEGAYSMVFITEDKLVAVRDPYGFRPLVMGRRSNGSVVFASETCALDLIEATYDREVFPGEVLVVDKNGIQSLCLMAHPQPKSCIFEHIYFALPNSVVFGRSVYESRRAFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQRIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIGSCYYGVDTPSAEELISNRMSVDEIREFIGCDSLAFLPFDSLTKLLGNDSSNFCYACFSGNYPVEPREIKVKRVGDFVDDGLNGSLESIDGGWVQANRHQNLENHLKVEKVGGV 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1757120 1758841 + CmaCh02G003580.1 Cma02g00358 288109

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00358 573 CDD GPATase_N 81 331 IPR035584 -
Cma02g00358 573 Pfam Glutamine amidotransferase domain 161 278 IPR017932 -
Cma02g00358 573 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 13 553 - -
Cma02g00358 573 Pfam Phosphoribosyl transferase domain 339 450 IPR000836 -
Cma02g00358 573 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 81 300 IPR017932 -
Cma02g00358 573 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 13 553 - -
Cma02g00358 573 Hamap Amidophosphoribosyltransferase [purF]. 80 521 IPR005854 GO:0004044|GO:0009113
Cma02g00358 573 Gene3D - 340 504 IPR029057 -
Cma02g00358 573 MobiDBLite consensus disorder prediction 1 24 - -
Cma02g00358 573 CDD PRTases_typeI 343 454 IPR000836 -
Cma02g00358 573 SUPERFAMILY PRTase-like 316 527 IPR029057 -
Cma02g00358 573 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 81 522 IPR029055 -
Cma02g00358 573 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 81 304 IPR029055 -
Cma02g00358 573 MobiDBLite consensus disorder prediction 7 24 - -
Cma02g00358 573 TIGRFAM purF: amidophosphoribosyltransferase 81 522 IPR005854 GO:0004044|GO:0009113
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00358 K00764 purF, PPAT; amidophosphoribosyltransferase [EC:2.4.2.14] - csv:101203840 933.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00358 Cma20g00802 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00358 Cma-Chr2:1757120 Cma03g00805 Cma-Chr3:6171654 6.33E-08 dispersed
Cma05g00867 Cma-Chr5:6047488 Cma02g00358 Cma-Chr2:1757120 3.82E-07 transposed
Cma02g00358 Cma-Chr2:1757120 Cma20g00802 Cma-Chr20:3768516 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g59 Blo02g00658 . . Bda08g00971 . . Bma05g00406 . . . Cma02g00358 Cma20g00802 Car02g00225 Car20g00687 . . . . . . . . . . . . . . . . . Cone12ag1199 Cone8ag1246 Cone3ag1203 . Lsi10g00425 . Chy11g00327 . . . . . . . . . Sed01g0252 Cmo02g00360 Cmo20g00810 . . . . Cpe16g00281 Cpe05g01298 Bhi10g01929 Tan05g1228 Cmetu11g1361 . Hepe08g0964 . . . . . . . . . . Csa02g01318 . Cme11g00452
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00344 CCT,ECH 33 188 PRT Gene Family AT1G80050 79.5 7.6e-66 247.3
Cma05g00376 CCT,ECH 33 191 PRT Gene Family AT1G80050 78.6 2.2e-65 245.7
Cma06g00768 . 30 180 PRT Gene Family AT1G80050 76.2 1.7e-62 236.1
Cma15g01143 . 30 180 PRT Gene Family AT1G80050 74.8 8.7e-62 233.8
Cma16g01064 . 30 180 PRT Gene Family AT1G80050 74.2 8.7e-62 233.8
Cma05g00145 CST 30 179 PRT Gene Family AT1G80050 70.7 7.1e-56 214.2
Cma12g00594 CST 104 253 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cma12g00344 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.8 1.9e-64 242.7
Cma05g00376 CCT,ECH 1 148 PRT Gene Family AT5G11160 80.4 4.1e-62 235.0
Cma15g01143 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.6
Cma05g00145 CST 8 145 PRT Gene Family AT5G11160 71.7 2.0e-53 206.1
Cma12g00594 CST 82 219 PRT Gene Family AT5G11160 71.0 3.4e-53 205.3
Cma06g00768 . 8 145 PRT Gene Family AT5G11160 71.7 8.5e-52 200.7
Cma16g01064 . 8 145 PRT Gene Family AT5G11160 70.3 7.2e-51 197.6
Cma12g00594 CST 75 257 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cma05g00145 CST 1 183 PRT Gene Family AT1G27450 82.0 1.6e-80 296.2
Cma15g01143 . 7 180 PRT Gene Family AT1G27450 74.1 4.7e-72 268.1
Cma16g01064 . 1 180 PRT Gene Family AT1G27450 70.0 4.4e-70 261.5
Cma06g00768 . 7 180 PRT Gene Family AT1G27450 71.8 2.9e-69 258.8
Cma12g00344 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 1.7e-66 249.6
Cma05g00376 CCT,ECH 11 183 PRT Gene Family AT1G27450 68.8 4.3e-65 245.0
Cma20g00802 CST 76 562 PRT Gene Family AT2G16570 83.4 8.2e-240 827.0
Cma02g00358 CST 68 554 PRT Gene Family AT2G16570 83.2 3.1e-239 825.1
Cma02g00358 CST 70 554 PRT Gene Family AT4G34740 85.0 1.2e-243 839.7
Cma20g00802 CST 82 562 PRT Gene Family AT4G34740 85.1 9.6e-241 830.1
Cma20g00802 CST 60 535 PRT Gene Family AT4G38880 72.7 2.5e-198 689.1
Cma02g00358 CST 26 527 PRT Gene Family AT4G38880 68.3 5.8e-195 677.9
Cma12g00594 CST 75 257 PRT Gene Family AT1G27450 82.5 1.1e-81 300.1
Cma05g00145 CST 1 183 PRT Gene Family AT1G27450 82.0 1.6e-80 296.2
Cma15g01143 . 7 180 PRT Gene Family AT1G27450 74.1 4.7e-72 268.1
Cma16g01064 . 1 180 PRT Gene Family AT1G27450 70.0 4.4e-70 261.5
Cma06g00768 . 7 180 PRT Gene Family AT1G27450 71.8 2.9e-69 258.8
Cma12g00344 CCT,ECH 11 183 PRT Gene Family AT1G27450 69.4 1.7e-66 249.6
Cma05g00376 CCT,ECH 11 183 PRT Gene Family AT1G27450 68.8 4.3e-65 245.0
Cma12g00344 CCT,ECH 33 188 PRT Gene Family AT1G80050 79.5 7.6e-66 247.3
Cma05g00376 CCT,ECH 33 191 PRT Gene Family AT1G80050 78.6 2.2e-65 245.7
Cma06g00768 . 30 180 PRT Gene Family AT1G80050 76.2 1.7e-62 236.1
Cma15g01143 . 30 180 PRT Gene Family AT1G80050 74.8 8.7e-62 233.8
Cma16g01064 . 30 180 PRT Gene Family AT1G80050 74.2 8.7e-62 233.8
Cma05g00145 CST 30 179 PRT Gene Family AT1G80050 70.7 7.1e-56 214.2
Cma12g00594 CST 104 253 PRT Gene Family AT1G80050 68.7 1.8e-54 209.5
Cma15g01143 . 5 97 PRT Gene Family AT4G22570 86.0 2.0e-43 172.2
Cma16g01064 . 5 97 PRT Gene Family AT4G22570 86.0 3.5e-43 171.4
Cma06g00768 . 5 104 PRT Gene Family AT4G22570 78.0 6.6e-42 167.2
Cma05g00145 CST 5 97 PRT Gene Family AT4G22570 80.6 4.0e-39 157.9
Cma12g00594 CST 81 171 PRT Gene Family AT4G22570 81.3 1.5e-38 156.0
Cma12g00344 CCT,ECH 11 100 PRT Gene Family AT4G22570 78.9 2.9e-37 151.8
Cma15g01143 . 1 96 PRT Gene Family AT4G12440 83.3 2.5e-40 161.8
Cma06g00768 . 1 96 PRT Gene Family AT4G12440 81.3 1.3e-39 159.5
Cma16g01064 . 1 96 PRT Gene Family AT4G12440 81.3 1.6e-39 159.1
Cma12g00594 CST 75 170 PRT Gene Family AT4G12440 78.1 2.0e-37 152.1
Cma05g00145 CST 1 96 PRT Gene Family AT4G12440 78.1 3.4e-37 151.4
Cma12g00344 CCT,ECH 4 99 PRT Gene Family AT4G12440 78.1 4.5e-37 151.0
Cma12g00344 CCT,ECH 1 148 PRT Gene Family AT5G11160 81.8 1.9e-64 242.7
Cma05g00376 CCT,ECH 1 148 PRT Gene Family AT5G11160 80.4 4.1e-62 235.0
Cma15g01143 . 8 145 PRT Gene Family AT5G11160 75.4 2.2e-55 212.6
Cma05g00145 CST 8 145 PRT Gene Family AT5G11160 71.7 2.0e-53 206.1
Cma12g00594 CST 82 219 PRT Gene Family AT5G11160 71.0 3.4e-53 205.3
Cma06g00768 . 8 145 PRT Gene Family AT5G11160 71.7 8.5e-52 200.7
Cma16g01064 . 8 145 PRT Gene Family AT5G11160 70.3 7.2e-51 197.6
Cma04g02471 . 1 184 PRT Gene Family AT1G71750 65.1 1.2e-68 256.9
Cma09g01034 . 60 512 PRT Gene Family AT1G55810 85.2 2.9e-224 775.0
Cma01g00388 . 19 482 PRT Gene Family AT1G55810 73.8 1.1e-199 693.3
Cma11g01493 . 550 964 PRT Gene Family AT1G55810 79.2 5.4e-194 674.5
Cma09g01034 . 109 511 PRT Gene Family AT3G27440 76.9 1.6e-184 642.9
Cma01g00388 . 80 482 PRT Gene Family AT3G27440 74.4 1.9e-177 619.4
Cma11g01493 . 565 964 PRT Gene Family AT3G27440 74.7 2.5e-177 619.0
Cma01g00388 . 1 482 PRT Gene Family AT3G27190 85.7 2.1e-244 842.0
Cma11g01493 . 550 964 PRT Gene Family AT3G27190 88.5 3.8e-222 768.1
Cma09g01034 . 47 511 PRT Gene Family AT3G27190 72.7 4.7e-204 708.0
Cma03g00404 . 4 286 PRT Gene Family AT3G53900 67.7 6.0e-109 391.3
Cma09g01034 . 45 512 PRT Gene Family AT4G26510 83.2 2.8e-230 795.0
Cma01g00388 . 11 482 PRT Gene Family AT4G26510 75.0 3.3e-210 728.4
Cma11g01493 . 550 964 PRT Gene Family AT4G26510 81.3 3.0e-203 705.3
Cma01g00388 . 1 482 PRT Gene Family AT5G40870 85.7 4.0e-243 837.8
Cma11g01493 . 550 964 PRT Gene Family AT5G40870 90.4 1.7e-225 779.2
Cma09g01034 . 88 514 PRT Gene Family AT5G40870 78.7 1.1e-203 706.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00358 Cma_Chr02 FPKM 4.923926 6.277809 7.440303 7.267663 16.204353 15.315347 15.788566 9.324074 9.563835 10.117599