Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00364 ATGATCAAACCATGTGTCCACAAAAGTAAACCAAAAAAAAAAATAATAATAATTAATTTATATTTATTTATATATTTTGGAATCTGCAACTGCCGCTCTGACCCGTCTTTTCCTTTCCTGCCTGCAATTATTCCCCACCCTCTCAGACAGAAAAAAATGGAGTGTTTGGAAGCTAAGGCTTTGAAATCGAGTTTCCACTGGGAATTAGCCATGGAATCTGCTCAACAAGACGCTTTGGTGGAGGAAATTTGGTGTTTGAACGGAGCTAATCTCGTCGCCGGCGAGGAGTTTGAAGTCGACGAGTTTTTTAACTTCTCTAATGGAGATTTTGAACATGGGTCTGCTTTGAGAGTTGAGGAAAATGACGATTATCAAGAGTTTGAGAAAGATTTGGTCTCTGTTTCGTCGGATTCGAACCAGTCCGGCGAGATTCCGGCTGCCGGAGAGGAGGACTCGAAGTCGCTTCTTGCCGTTGAGCTTGCTATTCCGGGCGATGCTCTGGCGGAGCTTGAATGGGTTTCTCATTTCGTCGACGATTCTCGGCTGGGATTTTCCAGCGCCGCCGTGGCTTTCAGCCGCTCCGAGCCGGAAAAGAACCTCGCCGGAGGTGTAATTTCGTGTTTGCCGACGTTTGTTCCGGTCAAACCAAGGACGAAAAGGTCGAGACAAAGTCGGCAAACGAAATCCACCGGTTCTTCTCTGAACCAATCGTCGTCGTCATCCTCCTCCTCGACGTCCTCCGGCGTTTCCTCCGCCTCACAGTGGTTCATCTTCTCCGACGCCGGCGAGAACGTGGACTCTTCAAACGCCGCCGGCGAGCCTCCGAAGAAGCAAAGGAAAAAGTCAATAACATCGTCGCCGACAGCTCTTCAATCCGGTGGTTTGACCGGTCAGATTCCGCGGCGGTGTAGTCATTGTCTGGTTCAGAAGACCCCACAATGGCGAACCGGTCCACACGGGGCCAAAACACTCTGCAACGCTTGTGGGGTCCGGTATAAATCCGGTCGGCTTTTTCCAGAGTATAGACCGGCGTTGAGCCCCACTTTTTGCAGCAATGTTCACTCAAACAGCCATCGAAAAGTGCTCGAAATGAGGAAGATGAAGGAGGTCTCCCAACCGGCAACCGAGTTGACTCCAATGGTCCGGAGTTACTAA 1155 49.78 MIKPCVHKSKPKKKIIIINLYLFIYFGICNCRSDPSFPFLPAIIPHPLRQKKMECLEAKALKSSFHWELAMESAQQDALVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEHGSALRVEENDDYQEFEKDLVSVSSDSNQSGEIPAAGEEDSKSLLAVELAIPGDALAELEWVSHFVDDSRLGFSSAAVAFSRSEPEKNLAGGVISCLPTFVPVKPRTKRSRQSRQTKSTGSSLNQSSSSSSSSTSSGVSSASQWFIFSDAGENVDSSNAAGEPPKKQRKKSITSSPTALQSGGLTGQIPRRCSHCLVQKTPQWRTGPHGAKTLCNACGVRYKSGRLFPEYRPALSPTFCSNVHSNSHRKVLEMRKMKEVSQPATELTPMVRSY 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1797272 1798853 - CmaCh02G003640.1 Cma02g00364 288115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00364 384 ProSitePatterns GATA-type zinc finger domain. 303 328 IPR000679 GO:0006355|GO:0043565
Cma02g00364 384 PANTHER GATA TRANSCRIPTION FACTOR 54 384 - -
Cma02g00364 384 MobiDBLite consensus disorder prediction 215 249 - -
Cma02g00364 384 PANTHER GATA TRANSCRIPTION FACTOR 54 384 - -
Cma02g00364 384 Gene3D - 296 372 IPR013088 GO:0006355|GO:0008270
Cma02g00364 384 ProSiteProfiles GATA-type zinc finger domain profile. 301 333 IPR000679 GO:0006355|GO:0043565
Cma02g00364 384 MobiDBLite consensus disorder prediction 281 296 - -
Cma02g00364 384 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 298 360 - -
Cma02g00364 384 MobiDBLite consensus disorder prediction 266 296 - -
Cma02g00364 384 SMART GATA_3 297 347 IPR000679 GO:0006355|GO:0043565
Cma02g00364 384 MobiDBLite consensus disorder prediction 225 249 - -
Cma02g00364 384 CDD ZnF_GATA 302 359 IPR000679 GO:0006355|GO:0043565
Cma02g00364 384 Pfam GATA zinc finger 303 336 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00364 - - - csv:101205298 502.286
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00364 Cma20g00811 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00364 Cma-Chr2:1797272 Cma16g00644 Cma-Chr16:3349745 6.26E-60 dispersed
Cma02g00364 Cma-Chr2:1797272 Cma20g00811 Cma-Chr20:3817823 1.35E-160 wgd
Cma02g00364 Cma-Chr2:1797272 Cma03g00704 Cma-Chr3:5744191 5.13E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g28 Blo02g00646 . Bda06g00964 Bda08g00959 Bpe07g00497 . Bma05g00426 . . . Cma02g00364 Cma20g00811 Car02g00231 Car20g00695 . . . . . . . . . . . . . . . . . Cone12ag1182 Cone8ag1227 . . Lsi10g00416 . . . . . . . . Bpe05g00319 . . . Cmo02g00367 Cmo20g00819 . . . . Cpe16g00276 Cpe05g01292 Bhi10g01940 Tan05g1237 . . Hepe08g0974 . . . . . . . . . . Csa02g01309 . Cme11g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003888 3 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 3 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34430 PF00320 GATA 2.40E-15 CL0167 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00364 Cma_Chr02 FPKM 20.495001 22.515718 42.884735 43.582439 22.978731 16.75668 21.699944 85.338753 76.648834 80.690033