Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00374 ATGGCTACTTACTATTCTAGTTCGAGTAATGGAAGGGATGCTACTCCTATCCTCTACTCGAGAGGAGCTTTGATCGGTTCGTATGAAGACTCGTCGATTCTTCCCCGGAATATGATGATGCATAATTCTGGGATGTACATGGATTCATGTCCTTCACAGGGAGACAATGGTTGTGGTCAGATAACGTCGGTTGGAGCAGCGGGAACGAGCCAACAACAGCAGGAGTTTTTGTCGAATCTCGGTGGTTCGGAGATTGCTGAGCATGATTTCAATACATGGAGAGGAGAGGGAAGGAGTGAAATGGTTGGTGCGAGCTCGATGCGTGGCCCGACCAATGTTCTTCATGGTGGGCAGAATTTGCAGGGTCAGGGGTTATCCCTTACTCTTAGTACACAAATTCCATCTGGAATTCAAATGCCTTCAATTCCTTATAGGAATTCGGATATGGGTTTAGCTTCGTTCTTGAGTCCGAATCCAACTAGTTCAAGCGACGATGGCTGCAGAAATGGCAGTTCTAGAGATGAGCAGTTGACAAAGGGGGGATTATCTCAATACAGTATGATGTCTACAATTGCGAGAACGATGCCGAACTCGAAGTACCTTAAGGCAGCACAACAACTCCTTGATGAAGCTGTTAATGTCAGGAAAGCTTTGAAGCGACCTAATAATGAGAGAAACCAGAGCTCACATGAGCATGAAACTAGAAGTGGAAAGAATGGTGATGCAGGAACCAAAAACGACGGTTCGATGGTCACTGCAAGCGGAGCGTCTTCGATCCCTCAAGAAACTGGAAGCAATTCAACTTGTGAGCTCTCTCATGCTGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAATATTACCACCAAATGCAGATTGTGGTATCATCATTTGATGTTATAGCAGGATGTGGGGCGTCTAAGCCATATACTGCACTTGCACTCCAGACTATATCTCGTCATTTTCGGTGCTTGCGGGATGCAATAGCTGGTCAAGTTCGAGCTACCCGTAAAAGCCTGGGAGAGCATGAGAATTCTGGAAATGACAAAGGGGTTGGAATCACCCGACTCCGGTACGTCGACCAGCAGTTAAGGCAACAAAGGGCTCTTCAGCAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCGATTCTTCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGACTCTGATAAGATCATGTTGGCAAGGCAAACAGGATTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCACGCGTGCGTCTTTGGAAACCTATGGTAGAGGAAATGTACAAGGAAGAGGCAGGCAGTGCAGAAATGGACTCTATATCATCATCTGAAAATGTTGGCAAGGGAACAAAAGGAGATAACAGGACCTTTGAGGATAATAAGGAGGAGGATCTGCAACAAAGTACAAGTTCAACAGCCACCGAAAGATGTAGCACTGGAGACATTATCGACTTAAAATCCGATCAAGCCTCTAATCTTGGAAATTCAGGTTCCACCAGACTAGCTAGTTTCCAAAATGGTGCTCACATCGAAGCCCAAAACGAGCTGGTAAAGTCGAGGGAGGAGCTAAGGCCTAATGTAAATAACTCTAATTTCTTTCCTGATGCAATTGTCCAGTCTCAGGCAGGAAGTGACAGGTTTATGGCTGCCGCTGCTGCCTATCACATGTCTGAACTGGGAAGGTTCGGGGCAGTTAGCGGGGTATCGCTTACACTGGGCTTGCAGCATTGTGAGGGTGGTGGCATACCTATGCCCACTGGGACACAACATGGTTTTGCAGCCATGAGAGGAGACGAAATGTACAATGCTGCAGCGTCTTCTCTTGGGGACACAGGCCATTTTGAATGTGTAAACGCTGGTAACCCACAACCGAGGTTCGGCCCTTCTCATCTTTACCATGATTTTGTTGTGTAA 2010 46.22 MATYYSSSSNGRDATPILYSRGALIGSYEDSSILPRNMMMHNSGMYMDSCPSQGDNGCGQITSVGAAGTSQQQQEFLSNLGGSEIAEHDFNTWRGEGRSEMVGASSMRGPTNVLHGGQNLQGQGLSLTLSTQIPSGIQMPSIPYRNSDMGLASFLSPNPTSSSDDGCRNGSSRDEQLTKGGLSQYSMMSTIARTMPNSKYLKAAQQLLDEAVNVRKALKRPNNERNQSSHEHETRSGKNGDAGTKNDGSMVTASGASSIPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEAGSAEMDSISSSENVGKGTKGDNRTFEDNKEEDLQQSTSSTATERCSTGDIIDLKSDQASNLGNSGSTRLASFQNGAHIEAQNELVKSREELRPNVNNSNFFPDAIVQSQAGSDRFMAAAAAYHMSELGRFGAVSGVSLTLGLQHCEGGGIPMPTGTQHGFAAMRGDEMYNAAASSLGDTGHFECVNAGNPQPRFGPSHLYHDFVV 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1882851 1886694 + CmaCh02G003740.1 Cma02g00374 288125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00374 669 MobiDBLite consensus disorder prediction 483 497 - -
Cma02g00374 669 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 72 620 - -
Cma02g00374 669 MobiDBLite consensus disorder prediction 464 508 - -
Cma02g00374 669 MobiDBLite consensus disorder prediction 219 273 - -
Cma02g00374 669 Gene3D - 389 468 - -
Cma02g00374 669 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 72 620 - -
Cma02g00374 669 SUPERFAMILY Homeodomain-like 395 461 IPR009057 -
Cma02g00374 669 ProSiteProfiles 'Homeobox' domain profile. 391 454 IPR001356 GO:0003677
Cma02g00374 669 SMART HOX_1 394 458 IPR001356 GO:0003677
Cma02g00374 669 MobiDBLite consensus disorder prediction 142 182 - -
Cma02g00374 669 MobiDBLite consensus disorder prediction 151 182 - -
Cma02g00374 669 CDD homeodomain 394 455 IPR001356 GO:0003677
Cma02g00374 669 Coils Coil 276 296 - -
Cma02g00374 669 MobiDBLite consensus disorder prediction 241 273 - -
Cma02g00374 669 MobiDBLite consensus disorder prediction 219 240 - -
Cma02g00374 669 Pfam Associated with HOX 196 343 IPR006563 -
Cma02g00374 669 MobiDBLite consensus disorder prediction 468 482 - -
Cma02g00374 669 SMART prehox3 189 344 IPR006563 -
Cma02g00374 669 Pfam Homeobox KN domain 411 450 IPR008422 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00374 Cma20g00823 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00374 Cma-Chr2:1882851 Cma14g00361 Cma-Chr14:1592554 2.96E-109 dispersed
Cma02g00374 Cma-Chr2:1882851 Cma20g00823 Cma-Chr20:3913634 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34431 PF07526 POX 1.50E-50 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00374 - - csv:101205137 1167.14