Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g00374 | ATGGCTACTTACTATTCTAGTTCGAGTAATGGAAGGGATGCTACTCCTATCCTCTACTCGAGAGGAGCTTTGATCGGTTCGTATGAAGACTCGTCGATTCTTCCCCGGAATATGATGATGCATAATTCTGGGATGTACATGGATTCATGTCCTTCACAGGGAGACAATGGTTGTGGTCAGATAACGTCGGTTGGAGCAGCGGGAACGAGCCAACAACAGCAGGAGTTTTTGTCGAATCTCGGTGGTTCGGAGATTGCTGAGCATGATTTCAATACATGGAGAGGAGAGGGAAGGAGTGAAATGGTTGGTGCGAGCTCGATGCGTGGCCCGACCAATGTTCTTCATGGTGGGCAGAATTTGCAGGGTCAGGGGTTATCCCTTACTCTTAGTACACAAATTCCATCTGGAATTCAAATGCCTTCAATTCCTTATAGGAATTCGGATATGGGTTTAGCTTCGTTCTTGAGTCCGAATCCAACTAGTTCAAGCGACGATGGCTGCAGAAATGGCAGTTCTAGAGATGAGCAGTTGACAAAGGGGGGATTATCTCAATACAGTATGATGTCTACAATTGCGAGAACGATGCCGAACTCGAAGTACCTTAAGGCAGCACAACAACTCCTTGATGAAGCTGTTAATGTCAGGAAAGCTTTGAAGCGACCTAATAATGAGAGAAACCAGAGCTCACATGAGCATGAAACTAGAAGTGGAAAGAATGGTGATGCAGGAACCAAAAACGACGGTTCGATGGTCACTGCAAGCGGAGCGTCTTCGATCCCTCAAGAAACTGGAAGCAATTCAACTTGTGAGCTCTCTCATGCTGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAATATTACCACCAAATGCAGATTGTGGTATCATCATTTGATGTTATAGCAGGATGTGGGGCGTCTAAGCCATATACTGCACTTGCACTCCAGACTATATCTCGTCATTTTCGGTGCTTGCGGGATGCAATAGCTGGTCAAGTTCGAGCTACCCGTAAAAGCCTGGGAGAGCATGAGAATTCTGGAAATGACAAAGGGGTTGGAATCACCCGACTCCGGTACGTCGACCAGCAGTTAAGGCAACAAAGGGCTCTTCAGCAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCGATTCTTCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGACTCTGATAAGATCATGTTGGCAAGGCAAACAGGATTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCACGCGTGCGTCTTTGGAAACCTATGGTAGAGGAAATGTACAAGGAAGAGGCAGGCAGTGCAGAAATGGACTCTATATCATCATCTGAAAATGTTGGCAAGGGAACAAAAGGAGATAACAGGACCTTTGAGGATAATAAGGAGGAGGATCTGCAACAAAGTACAAGTTCAACAGCCACCGAAAGATGTAGCACTGGAGACATTATCGACTTAAAATCCGATCAAGCCTCTAATCTTGGAAATTCAGGTTCCACCAGACTAGCTAGTTTCCAAAATGGTGCTCACATCGAAGCCCAAAACGAGCTGGTAAAGTCGAGGGAGGAGCTAAGGCCTAATGTAAATAACTCTAATTTCTTTCCTGATGCAATTGTCCAGTCTCAGGCAGGAAGTGACAGGTTTATGGCTGCCGCTGCTGCCTATCACATGTCTGAACTGGGAAGGTTCGGGGCAGTTAGCGGGGTATCGCTTACACTGGGCTTGCAGCATTGTGAGGGTGGTGGCATACCTATGCCCACTGGGACACAACATGGTTTTGCAGCCATGAGAGGAGACGAAATGTACAATGCTGCAGCGTCTTCTCTTGGGGACACAGGCCATTTTGAATGTGTAAACGCTGGTAACCCACAACCGAGGTTCGGCCCTTCTCATCTTTACCATGATTTTGTTGTGTAA | 2010 | 46.22 | MATYYSSSSNGRDATPILYSRGALIGSYEDSSILPRNMMMHNSGMYMDSCPSQGDNGCGQITSVGAAGTSQQQQEFLSNLGGSEIAEHDFNTWRGEGRSEMVGASSMRGPTNVLHGGQNLQGQGLSLTLSTQIPSGIQMPSIPYRNSDMGLASFLSPNPTSSSDDGCRNGSSRDEQLTKGGLSQYSMMSTIARTMPNSKYLKAAQQLLDEAVNVRKALKRPNNERNQSSHEHETRSGKNGDAGTKNDGSMVTASGASSIPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEAGSAEMDSISSSENVGKGTKGDNRTFEDNKEEDLQQSTSSTATERCSTGDIIDLKSDQASNLGNSGSTRLASFQNGAHIEAQNELVKSREELRPNVNNSNFFPDAIVQSQAGSDRFMAAAAAYHMSELGRFGAVSGVSLTLGLQHCEGGGIPMPTGTQHGFAAMRGDEMYNAAASSLGDTGHFECVNAGNPQPRFGPSHLYHDFVV | 669 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1882851 | 1886694 | + | CmaCh02G003740.1 | Cma02g00374 | 288125 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g00374 | 669 | MobiDBLite | consensus disorder prediction | 483 | 497 | - | - | |
Cma02g00374 | 669 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 10 | 72 | 620 | - | - | |
Cma02g00374 | 669 | MobiDBLite | consensus disorder prediction | 464 | 508 | - | - | |
Cma02g00374 | 669 | MobiDBLite | consensus disorder prediction | 219 | 273 | - | - | |
Cma02g00374 | 669 | Gene3D | - | 389 | 468 | - | - | |
Cma02g00374 | 669 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 72 | 620 | - | - | |
Cma02g00374 | 669 | SUPERFAMILY | Homeodomain-like | 395 | 461 | IPR009057 | - | |
Cma02g00374 | 669 | ProSiteProfiles | 'Homeobox' domain profile. | 391 | 454 | IPR001356 | GO:0003677 | |
Cma02g00374 | 669 | SMART | HOX_1 | 394 | 458 | IPR001356 | GO:0003677 | |
Cma02g00374 | 669 | MobiDBLite | consensus disorder prediction | 142 | 182 | - | - | |
Cma02g00374 | 669 | MobiDBLite | consensus disorder prediction | 151 | 182 | - | - | |
Cma02g00374 | 669 | CDD | homeodomain | 394 | 455 | IPR001356 | GO:0003677 | |
Cma02g00374 | 669 | Coils | Coil | 276 | 296 | - | - | |
Cma02g00374 | 669 | MobiDBLite | consensus disorder prediction | 241 | 273 | - | - | |
Cma02g00374 | 669 | MobiDBLite | consensus disorder prediction | 219 | 240 | - | - | |
Cma02g00374 | 669 | Pfam | Associated with HOX | 196 | 343 | IPR006563 | - | |
Cma02g00374 | 669 | MobiDBLite | consensus disorder prediction | 468 | 482 | - | - | |
Cma02g00374 | 669 | SMART | prehox3 | 189 | 344 | IPR006563 | - | |
Cma02g00374 | 669 | Pfam | Homeobox KN domain | 411 | 450 | IPR008422 | GO:0003677|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g00374 | Cma20g00823 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00374 | Cma-Chr2:1882851 | Cma14g00361 | Cma-Chr14:1592554 | 2.96E-109 | dispersed | |
Cma02g00374 | Cma-Chr2:1882851 | Cma20g00823 | Cma-Chr20:3913634 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34431 | PF07526 | POX | 1.50E-50 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g00374 | - | - | csv:101205137 | 1167.14 |