Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00375 ATGTACGGACTGTATTACGAGAGACGTAAGAGACTAAAATTATCTACTGATGGAAAAGATTTCCCTGGCACCACCACCATTTCTGCCCAAAAATGTGACACACCGAGACAAAACAAAATGAAGAACTCGGCGAAAGTAATTGATTACTCTGATCCGTTTGCCATTAATAATTTGATCGATAGCTTGGATTGTGGTCAGTTTGGAAGTGTCACTAAAGAGATTGAAGTCCTTGTTTCGTCTAAGATGCAAATTTTAAGTCCTTACATTGCCAAGTATCCTACGCTGTCGAGTATGTTATTTGGTCTGGGGAGAAGTAAAGAGTGTACAGAGGCAATGGATCATCAAGCTTCCCAATTGGTTCATAATAATCTCATTGATTTGGAGGATGATTCTGCCATTGACGTTCGTGACAATGATGTTGAGAAATCACAATTGCCTATTGTAATAATTGATTCTGATGAGGAAGAAAGCTATGTTCCGAGGCGTATACATCCTTTTCAAGAGGTTGTTCTGCCTGGACCACCTGGACAAAGTCTCTTCAAGGACAAAGTGGTAGTGGGACGCCGGGCTTCAAATGGGGAGGAAGCAACTCCTATTGGTGAAAGTGAAACTATAAGTAAGAAAGACAGAGGTGTTTACGTCGGTATAGAAGAGGATGAGGACAGCGAACAGGCTAACAGTGAAGAAGATGGTCTTGAAGATATTTGGAACGATATGAAAATGGCATTGGAATGTTCCAAGGACTTGGATGTCGCTATAGATTCATCATCTAATCAACAAACTACAGATGATACGGACTGTGATCATTCTTTTCTCTTGAAGGAGGATCTTGGTCATGTTTGTCGCATTTGTGGGGTTATTGGCAGAGGAATTGAGACCATTTTTGAGTTTCAGTACAACAAGGGTAAGAAGAGCACAAGAACATACATGTCTGAATCTCGCAACAAAGATTTAGGTGACCTTGAAGTTAAAATTTCAGAAGATGATTTGACTGTAACTGAAATTTCTGCACACCCTAGGCATATGAAGCAAATGAAGCCTCATCAAATGGAAGGTTTCAATTTCCTTATAAGCAACTTGGTAACTGACAATCCTGGAGGCTGCATTTTGGCTCACGCTCCTGGATCTGGAAAAACCTTTATGATAATCAGTTTTATGCAAAGTTTTTTAGCCAAGTATCCACAGGCCAGACCATTGGTTGTGCTTCCCAAAGGAATCTTGGCTACATGGAAAAAAGAGTTTCAGATTTGGCAAGTGGAAGATATTCCACTCTATGATTTCTATTCTGTTAAAGCTGATAATAGGGCTCAACAGCTGACAGTACTGAATCAGTGGGTCGAGCACAAGAGTATTCTGTTCTTAGGATACAAACAATTTTCCACAATCGTCTGTGAGGTTGAAACCAATGCATCATCAACTGCATGTCAAAATATATTGCTCAAGGTTCCTACCATTCTTATTCTAGATGAGGGGCATACTCCAAGAAATGAGAACACTGATATTTTGCAAGCTCTTGCCAAAGTCAGAACTCCACGAAAAGTGGTTCTTTCTGGAACCCTTTATCAGAACCATGTTAAAGAGGTATTCAATATAGTGAATCTTGTTCGACCGAAGTTCATGAGATCCGAAACTTCTCGACCTATCATCAAGCGCATCATGTCAAGAGTGGATATACCTGGTGTGAGGAAGCAGTTCAAAACAGGTGTTGATTCTGCTTTTTATGATTTGGTGGAACATACACTTCAAAAGGATAAAGATTTCAGGAGGAAAGTGAGTGTCATCCATGATTTACGTGAAATGACCAGTAAGATTTTGCATTACTATAAAGGGGATTTTCTCGATGAGCTCCCTGGATTGGTCGACTTTACCGTGGTGTTGAATCTCACTTCTAAACAGAAGCACGAAGGAGAAAAAGTTAAAAAGTTCAATAGGAAGTTCAAAATAAGCTCTGCCGGCAGTGCTGTTTATTTACACCCAAAGTTGAATGTTTTCTCTGTGAATGCTGTTGTAACGGATGACAAAATAGATGAGGTCATTGATAAGCTGGACGTTAAAGATGGAGTGAAGGCAAAATTCTTTCTTAACATGCTGAATTTGTGTGCCACTACCGGGGAGAAGCTGCTGGTTTTCAGCCAATACCTGCTCCCTTTGAAATTCATGGAGAGATTGGTTGTGCAGAAGAAAGGTTGGAGTCCAGGAAAAGAAACCTTCATGATATCTGGTGAAACAACTTCTGAGCATCGGGAATGGTCGATGGAACGCTTCAACAACTCGCCCGATGCTCGAGTCTTCTTTGGTTCCATTAAGGCCTGTGGGGAAGGCATATCTCTAGTAGGGGCATCGCGTATCATTATTTTGGATGTTCATCTGAATCCATCAGTGACCCGCCAAGCAATTGGTCGTGCTTTCCGTCCTGGCCAAACTAAGAAAGTCTTTGCTTATAGATTGGTGGCTGCTGACTCTCCTGAAGAGGGGGATCATAGCGCTTGCTTCAAGAAGGAACTGATTGCTAAGATGTGGTTCGAGTGGAACGAGTATTGTGGCTATCATGACTTTGAAGTGACGACTGTTGACGTGAAAGATTGTGGCGATAATTTTCTAGAAACCCCACTTCTAAATCAAGATGTCAGAGTTCTGTACAGAAGGTAG 2649 41.19 MYGLYYERRKRLKLSTDGKDFPGTTTISAQKCDTPRQNKMKNSAKVIDYSDPFAINNLIDSLDCGQFGSVTKEIEVLVSSKMQILSPYIAKYPTLSSMLFGLGRSKECTEAMDHQASQLVHNNLIDLEDDSAIDVRDNDVEKSQLPIVIIDSDEEESYVPRRIHPFQEVVLPGPPGQSLFKDKVVVGRRASNGEEATPIGESETISKKDRGVYVGIEEDEDSEQANSEEDGLEDIWNDMKMALECSKDLDVAIDSSSNQQTTDDTDCDHSFLLKEDLGHVCRICGVIGRGIETIFEFQYNKGKKSTRTYMSESRNKDLGDLEVKISEDDLTVTEISAHPRHMKQMKPHQMEGFNFLISNLVTDNPGGCILAHAPGSGKTFMIISFMQSFLAKYPQARPLVVLPKGILATWKKEFQIWQVEDIPLYDFYSVKADNRAQQLTVLNQWVEHKSILFLGYKQFSTIVCEVETNASSTACQNILLKVPTILILDEGHTPRNENTDILQALAKVRTPRKVVLSGTLYQNHVKEVFNIVNLVRPKFMRSETSRPIIKRIMSRVDIPGVRKQFKTGVDSAFYDLVEHTLQKDKDFRRKVSVIHDLREMTSKILHYYKGDFLDELPGLVDFTVVLNLTSKQKHEGEKVKKFNRKFKISSAGSAVYLHPKLNVFSVNAVVTDDKIDEVIDKLDVKDGVKAKFFLNMLNLCATTGEKLLVFSQYLLPLKFMERLVVQKKGWSPGKETFMISGETTSEHREWSMERFNNSPDARVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLVAADSPEEGDHSACFKKELIAKMWFEWNEYCGYHDFEVTTVDVKDCGDNFLETPLLNQDVRVLYRR 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1886998 1893505 - CmaCh02G003750.1 Cma02g00375 288126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00375 882 Gene3D - 313 558 IPR038718 -
Cma02g00375 882 Pfam Helicase conserved C-terminal domain 695 805 IPR001650 -
Cma02g00375 882 PANTHER PROTEIN CHROMATIN REMODELING 35 6 882 - -
Cma02g00375 882 CDD SF2_C_SNF 673 817 - -
Cma02g00375 882 SMART ultradead3 341 549 IPR014001 -
Cma02g00375 882 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 6 882 IPR044567 GO:0080188
Cma02g00375 882 Pfam SNF2-related domain 364 597 IPR000330 GO:0005524|GO:0140658
Cma02g00375 882 Gene3D - 617 849 IPR027417 -
Cma02g00375 882 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 359 538 IPR014001 -
Cma02g00375 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 540 IPR027417 -
Cma02g00375 882 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 695 860 IPR001650 -
Cma02g00375 882 SMART helicmild6 718 806 IPR001650 -
Cma02g00375 882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 844 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00375 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - csv:101207775 1569.67
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00375 Cma20g00824 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00375 Cma-Chr2:1886998 Cma02g01579 Cma-Chr2:8969120 1.03E-89 dispersed
Cma02g00375 Cma-Chr2:1886998 Cma20g00824 Cma-Chr20:3920382 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1 . . . . Bpe07g00526 . . . . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 . Cpe04g00116 . . . . . . . . Cla02g00501 Cam02g0511 Cec02g0511 Cco02g0519 Clacu02g0513 Cmu02g0509 Cre02g0842 . . . . . . . Cme01g01368 . . . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . . . Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . . Chy01g00763 .
Vvi3g3 . Blo15g00679 Bda06g00991 . . . . Bma12g00550 . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 Sed03g1723 . . Bhi05g01788 Tan02g2021 Cmetu03g0999 . . . . . . . . . . . Cone12ag1169 Cone8ag1217 . . Lsi10g00400 . Chy11g00351 . . Blo13g00542 . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . Csa02g01291 . Cme11g00153
Vvi3g335 . Blo15g00756 Bda06g01081 . . . . . . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 . . . . . . . . . . . . . . . . . . . . . Lsi10g00400 . Chy11g00351 . . . . . . . . . . Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01968 . . . Hepe08g0991 . . . . . . . . . . Csa02g01291 . Cme11g00153
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004368 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 2 4 1 3 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34432 PF00176 SNF2_N 4.70E-20 CL0023 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00375 Cma_Chr02 FPKM 1.030532 1.429254 0.257355 0.247781 2.147454 2.672863 2.62609 0.278637 0.135611 0.214316