Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00384 ATGTCGGACGCCGCGCCAGACCCTCAGCCCAAAGGTGGCAACGAAGCTGAGATGTCGGAGGAAGATAGAAAGATGAGGCTTGCATCTCTTAAGCAGAAAGCGATCAGTGCCTCAAACAAGTACAAACTTTCAATGAAGAAACGAGGTAGGAGAAACAGCAGCAGAGTGATGTCTATCTCAATTGAAGACGACATCGACGCAGAAGAATTACAAGCAGTTGATGCCTTCCGCCAAGCTCTGATATTGGAAGAACTCCTCCCTGCCAGACATGATGATCATCACATGATGCTCAGATTCTTGAAGGCTAGAAAGTTTGATTTTGACAAGACAAAGCAAATGTGGACTGACATGCTTCAATGGAGGAAAGAGTTTGGATCCGACACAATCATGGAGGAGTTTGAATTCAAGGAGGTTGATGAAGTGTTGAAGTACTATCCACAAGGGCATCATGGAGTTGACAAGGACGGACGGCCCGTGTACATCGAACGACTCGGGCAAGTTGATTCCACCAAGCTCTTGGAGGTGACGACCATGGATAGATACATCAATTACCATGTCCGAGAGTTCGAGAGGACGTTTGTTTTGAAGTTCCCAGCTTGCACTATTGCAGCTAAGAAGCACATTGATCAAAGCACGACCATCTTGGATGTCCAAGGAGTGGGATTGAAAAACTTCAACAAATCTGCTAGGGAGCTTATCCAGAGGCTGCAGAAGATTGATGGTGACAACTATCCAGAGACTTTGAACAGAATGTTCATCATCAACGCTGGATCTGGATTTAGGCTGCTGTGGAACACTGTAAAATCATTCCTTGACCCAAAAACGACAGCCAAAATCCATGTTCTTGGCAATAAGTATCAGCCCAAGTTGCTGGAGATCATTGATGCCAGTGAACTTCCGGAGTTCATTGGAGGTACTTGCACCTGTGCTGACAAGGGTGGCTGCATGAGATCCGACAAGGGACCATGGAACGACCCAGAAATTGCCAAGATGGTTCAAAACGGGGAAGGAAAATGCAGGAGAAGGTCGTTATCCAACGTTGAAGAGAAGACCATCTCTGAAGATGACAACACAGGAGCCAAGGCAAGTGGTTCATTCAAAGCAGAAGCAGCTCCTGTGGCAGCTGCAGCACCAGCTGCTGAATCAGGCATGTCCCCAAAGCAAGCAAAATCAACCCCTATCATTCAAGAAGTTCCATCAACCAGAAAGTATGGCGGTGAGTATCAACAATATGGTCAGTTCATGCCAGTGGTGGACAAAGCCGTGGATCCAAGTTGGGCACTTTCAAGTGAGAAATATGGTCTTTCCAAAGATCCATTTGCTCATGAAAACTACAAAGTCCCAGAAGGGTTCAGCAACCAAATAGTTGGGGGAATAATGGCTTTGGTGATGGGAATAGTGACCATGGTCCGGCTGACAAGAACCATGCCAAAGAAGCTCACTGAGGCAGCCATCTATAGCAGCACCGTCTACTACGACGGTTCGATGGCGAACCGTCCAGCATTACCGTCCCCCGCCGCGGTGCCTCTGAGCGATTACATGACGATGATGAAGCGTATGGCGGAGCTAGAAGAGAGGATCAATGTTCTCAACATGCAGCCGGCAGTGATGCCAGCTGATAAGGAGGAAATGCTCAACATTGCTTTAGGGAAAGTTGAAACTTTGGAACAAGAGCTAGACACAACCAAGAAGGCACTCGAGGAATCTCTTGCTCGAGAAGCCGAGCTGACTGACTACATCGAGAAGAAGAAGAAGAAGAAGATGGTGAACCCATTCCGCTGGTGA 1785 47.51 MSDAAPDPQPKGGNEAEMSEEDRKMRLASLKQKAISASNKYKLSMKKRGRRNSSRVMSISIEDDIDAEELQAVDAFRQALILEELLPARHDDHHMMLRFLKARKFDFDKTKQMWTDMLQWRKEFGSDTIMEEFEFKEVDEVLKYYPQGHHGVDKDGRPVYIERLGQVDSTKLLEVTTMDRYINYHVREFERTFVLKFPACTIAAKKHIDQSTTILDVQGVGLKNFNKSARELIQRLQKIDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTTAKIHVLGNKYQPKLLEIIDASELPEFIGGTCTCADKGGCMRSDKGPWNDPEIAKMVQNGEGKCRRRSLSNVEEKTISEDDNTGAKASGSFKAEAAPVAAAAPAAESGMSPKQAKSTPIIQEVPSTRKYGGEYQQYGQFMPVVDKAVDPSWALSSEKYGLSKDPFAHENYKVPEGFSNQIVGGIMALVMGIVTMVRLTRTMPKKLTEAAIYSSTVYYDGSMANRPALPSPAAVPLSDYMTMMKRMAELEERINVLNMQPAVMPADKEEMLNIALGKVETLEQELDTTKKALEESLAREAELTDYIEKKKKKKMVNPFRW 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1941775 1947641 - CmaCh02G003840.1 Cma02g00384 288135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00384 594 MobiDBLite consensus disorder prediction 339 356 - -
Cma02g00384 594 Pfam CRAL/TRIO, N-terminal domain 89 116 IPR011074 -
Cma02g00384 594 Gene3D - 45 124 - -
Cma02g00384 594 MobiDBLite consensus disorder prediction 377 397 - -
Cma02g00384 594 Coils Coil 513 533 - -
Cma02g00384 594 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH10-RELATED 15 589 - -
Cma02g00384 594 SUPERFAMILY CRAL/TRIO N-terminal domain 63 132 IPR036273 -
Cma02g00384 594 Gene3D - 125 336 IPR036865 -
Cma02g00384 594 Coils Coil 545 572 - -
Cma02g00384 594 Pfam CRAL/TRIO domain 143 305 IPR001251 -
Cma02g00384 594 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 137 311 IPR001251 -
Cma02g00384 594 PRINTS Cellular retinaldehyde-binding protein signature 95 117 - -
Cma02g00384 594 PRINTS Cellular retinaldehyde-binding protein signature 264 283 - -
Cma02g00384 594 PRINTS Cellular retinaldehyde-binding protein signature 297 306 - -
Cma02g00384 594 SMART sec14_4 137 308 IPR001251 -
Cma02g00384 594 SMART CRAL_TRIO_N_2 92 117 IPR011074 -
Cma02g00384 594 CDD SEC14 139 306 IPR001251 -
Cma02g00384 594 MobiDBLite consensus disorder prediction 339 365 - -
Cma02g00384 594 MobiDBLite consensus disorder prediction 1 27 - -
Cma02g00384 594 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 15 589 - -
Cma02g00384 594 SUPERFAMILY CRAL/TRIO domain 137 333 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00384 - - - csv:101214906 1001.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00384 Cma20g00835 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00384 Cma-Chr2:1941775 Cma20g00835 Cma-Chr20:3991867 0 dispersed
Cma02g00815 Cma-Chr2:4808213 Cma02g00384 Cma-Chr2:1941775 1.62E-08 dispersed
Cma02g00383 Cma-Chr2:1934509 Cma02g00384 Cma-Chr2:1941775 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g351 . . . . . . . . . . Cma02g00384 Cma20g00835 Car02g00249 Car20g00721 . . . . . . . . . . . . . . . . . Cone12ag1161 Cone8ag1210 Cone3ag1174 Cone10ag0980 Lsi10g00390 . Chy11g00363 . Blo04g00519 . . . . . . . Sed01g0289 Cmo02g00390 Cmo20g00843 . . . . Cpe16g00255 Cpe05g01273 Bhi10g01982 Tan05g1281 Cmetu11g0971 . Hepe08g1000 . . . . . . . . . . Csa02g01280 . Cme11g00134
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005364 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00384 Cma_Chr02 FPKM 1.171286 1.025128 0.227466 0.269621 0.0 0.0 0.32315 3.829091 4.30968 3.302398