Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00385 ATGGCCCTGTTCTTCGCTTTATCTGTTCTAGAACAGAGCAAAACCCAGAAGAACATCAACAATGGAGGATCAGAGAAAATACCTTTTGACAAGAGTGCAGGAAGGAGAAAGAGGAAGATATATGAAGAAATGTTTACTCAAAATAGGCCTCCAAAAGGGACAACCCACACAGGGATTTCTGGTTCATCCACCATAGACAAAGTGAAGATTTTCATCCCCTCGGTTCTACCCCACTTCTGTGGAAGTCGGGTGTGCGGGGGAAGATCATTCAAGTTACCATCATTTAGGTTTGGTCGAGTTTTTAGTTCTAATATGGCTGGTGATCCTTTGACAAGCTCTGATGGCAATGCCAATGTCAATGCACAACCTGATCCACGGAGGACGTATCAGGTTGTTGTGGCGGCTACTGAAAATATGGGTATTGGTAAGGATGGGCAACTACCATGGATGTTGCCGTCTGATCTCAAGTTTTTTAGAAACATAACCACAACAACATCGGATCCAGGGAAAAGGAATGCAATTCTAATGGGTCGAAAAACATGGGAGGGTATTCCTCCTGAGCGCCGACCACTACCAGGTCGTCTCAATGTTGTTCTGACTCGCTCGGGGAGTTTTGACATTGCCACCGTTGAAAATGTCATAATATGTGGTAGTATAACGTCTGCTTTGGAGTTATTAGCAGCTTCTCCGTACTGTTTGTCAATAGAGAAAGTGTTCGTTATAGGTGGAGGCGAGATATTAAGGGAAGCTCTGAATGCCCCTGAATGTGATGCTATCCACATTACTGAAATTGTGGCAAATGTTGACTGTGACACCTTCATTCCAGCTATTGATAAGTCTATGTTTCAGCCATGGTACTCGTCGTTTCCTGTGGTGGAAAATAACTTTCAATATTCTTTCACTAGTTATGTTCGTGTGAGGAGCTCGGTAGAATCACCTATTGATCAGAACAATGGCCCGATCGGTAATGACAAGCCTGATTTTTCTAACTTTGAGGCTAAGAAGTTCTCTTTCCTACCGAAGGAGATTTTTGAGAGGCACGAGGAGTACTTGTACTTAAAACTTGTTCAAGAAATTATCTCAAATGGTACCGCTAAGGAAGATAGAACAGGAACAGGTACTTTGTCAAGATTCGGGTGTCAGATGCGGTACAACTTGCGCAAAACGTTTCCGCTGCTTACAACTAAGAAAGTATTTTGGCGAGGGGTCGTTGAAGAACTTCTTTGGTTCATAAGTGGTTCGACGAATGCAAAGGTTCTTCAGGAGAAAGGCATTCATATTTGGGATGGCAATGCATCGAGAGATTACCTCGATAGTATTGGTTTGAAAGAATGGGAGGAGGGCGACTTGGGACCTGTATATGGGTTCCAGTGGCGACACTTCGGTGCTAGGTATACTGACATGCATGCTGACTATACTGGTCAAGGATTTGATCAGTTGCTAGATGTTATTAACAAGATAAAGAACAATCCCGATGACCGGAGGATCGTTCTTTCTGCTTGGAATCCATCTGATCTCAAACTAATGGCACTTCCTCCTTGCCACATGTTCGCTCAGTTTTATGTAGCGAACGGGGAATTATCGTGTCAAATGTATCAGCGCTCTGCTGACATGGGCCTTGGTGTTCCGTTCAATATTGCATCATATGCTCTTCTGACGTGCATGATTGCTCATGTTTGTGGTCTTGCTCGAGGCGACTTCATACACGTGATTGGAGATGCTCATGTTTACCGTACTCACGTGAGGCCATTGCAGGAGCAGCTTCAAAAACTCCCCAAACCGTTCCCGACTTTGAAGATTAACCCCGAGAAGAACGATATCGACTCTTTCGCGGCAGCTGATTTCGAATTAATCGGTTACGACCCTCATGAGAAGATAGCAATGAAAATGGCAGTGTAG 1899 44.13 MALFFALSVLEQSKTQKNINNGGSEKIPFDKSAGRRKRKIYEEMFTQNRPPKGTTHTGISGSSTIDKVKIFIPSVLPHFCGSRVCGGRSFKLPSFRFGRVFSSNMAGDPLTSSDGNANVNAQPDPRRTYQVVVAATENMGIGKDGQLPWMLPSDLKFFRNITTTTSDPGKRNAILMGRKTWEGIPPERRPLPGRLNVVLTRSGSFDIATVENVIICGSITSALELLAASPYCLSIEKVFVIGGGEILREALNAPECDAIHITEIVANVDCDTFIPAIDKSMFQPWYSSFPVVENNFQYSFTSYVRVRSSVESPIDQNNGPIGNDKPDFSNFEAKKFSFLPKEIFERHEEYLYLKLVQEIISNGTAKEDRTGTGTLSRFGCQMRYNLRKTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASRDYLDSIGLKEWEEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIVLSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCGLARGDFIHVIGDAHVYRTHVRPLQEQLQKLPKPFPTLKINPEKNDIDSFAAADFELIGYDPHEKIAMKMAV 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1947586 1956434 + CmaCh02G003850.1 Cma02g00385 288136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00385 632 Pfam Thymidylate synthase 352 632 IPR023451 -
Cma02g00385 632 ProSitePatterns Thymidylate synthase active site. 494 522 IPR020940 GO:0004799|GO:0006231
Cma02g00385 632 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 334 632 IPR036926 -
Cma02g00385 632 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 140 162 IPR017925 GO:0004146
Cma02g00385 632 CDD TS_Pyrimidine_HMase 352 585 IPR023451 -
Cma02g00385 632 PIRSF DHFR-TS 112 632 IPR012262 GO:0004146|GO:0004799|GO:0006730
Cma02g00385 632 Hamap Thymidylate synthase [thyA]. 349 632 IPR000398 GO:0004799|GO:0006231
Cma02g00385 632 Pfam Dihydrofolate reductase 130 305 IPR001796 GO:0004146|GO:0046654
Cma02g00385 632 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 128 305 IPR001796 GO:0004146|GO:0046654
Cma02g00385 632 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 105 632 - -
Cma02g00385 632 CDD DHFR 132 304 IPR001796 GO:0004146|GO:0046654
Cma02g00385 632 PRINTS Thymidylate synthase family signature 483 502 IPR000398 GO:0004799|GO:0006231
Cma02g00385 632 PRINTS Thymidylate synthase family signature 527 553 IPR000398 GO:0004799|GO:0006231
Cma02g00385 632 PRINTS Thymidylate synthase family signature 565 582 IPR000398 GO:0004799|GO:0006231
Cma02g00385 632 PRINTS Thymidylate synthase family signature 390 411 IPR000398 GO:0004799|GO:0006231
Cma02g00385 632 PRINTS Thymidylate synthase family signature 509 524 IPR000398 GO:0004799|GO:0006231
Cma02g00385 632 PANTHER THYMIDYLATE SYNTHASE 1 105 632 IPR045097 GO:0016741
Cma02g00385 632 SUPERFAMILY Dihydrofolate reductase-like 126 305 IPR024072 -
Cma02g00385 632 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 341 632 IPR036926 -
Cma02g00385 632 Gene3D Dihydrofolate Reductase, subunit A 112 307 IPR024072 -
Cma02g00385 632 TIGRFAM thym_sym: thymidylate synthase 352 632 IPR000398 GO:0004799|GO:0006231
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00385 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - csv:101208660 986.482
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00385 Cma20g00837 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00385 Cma-Chr2:1947586 Cma20g00837 Cma-Chr20:4009158 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00385 Cma_Chr02 FPKM 11.169054 12.638719 15.437396 15.114801 5.688751 5.881498 6.585888 5.193855 5.813516 6.082249