Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00391 ATGGGGAAGGTCAAGGGAAAGCATCGTTTGGACAAGTACTACCGCCTTGCCAAAGAACATGGCTATCGCTCTCGTGCCTCCTGGAAACTCGCCCAGCTCGACTCCAAATACAACTTCCTCCGTTCCTCCCATGCCGTCCTCGATCTCTGCGCCGCCCCTGGTGGTTGGATGCAAGTCGCCGTCGAACGGGTTCCCGTCGGTAGCCTCGTTGTCGGTGTCGATTTGGTTCCTATTGCGCCCGTTCGCGGTGCGCTCGCTATTGAGCAGGATATCACCAGGCCGGAGTGCAAGGCGAGGCTCAAGAAGATTATGAACGAGAAAGGGTGTGCTGCTTTTGATTTGGTCTTGCACGATGGGTCGCCGAATGTTGGTGGAGCTTGGGCGCAGGAGGCTATGAGCCAGAATTCGTTGGTTATTGATTCTGTCAAATTAGCTACTCAATTACTGGCTCCTAAGGGTACATTTGTTACCAAGGTTTTCAGGTCACAAGATTACAGTTCTGTCCTATATTGTCTCAAGCAGTTGTTTGAAAAGGTCGAGGTGGATAAACCAGCAGCAAGTCGATCTGCATCTGCTGAAATTTATGTTTTAGGCCTTAGGTATAAGGCTCCTGCAAAGATCGATCCTCGTCTTCTTGATGTGAAGCACCTATTTCAAGGATCTGTAGAACCCCAACGGAAGGTTGTGGATGTACTTAGAGGAACAAAACAAAAGAGACATCGTGATGGGTATGAAGATGGAGATATGACTCTTCGGAAAGAATCTTCTGCATCTAATTTCATCTGGTCAGATTCTCCTCTTGAGATCCTAGGAACTGTTACTACTATAACTTTTAACGATCCTGCTTGCTTGCTGATTAAGGATCATGAATTAACAACCGAAGAGGTTAAGACACTGTGTGATGATTTGGGTGTCTTGGGAAAGCAAGATTTTAAGCATCTGCTGAAGTGGCGATTGCACATAAGAAAGGCATTATCTCCCAAGCAAAAGGTTACGTCCACTTCTGTTAATGATGCTGAAAATGAGGTTAAGCAAGATGAAGATGATAAATTACTAAATGAGATGGAGGAGCTGACATATGCTATGGAACGGAAGAAGAAAAGGGAAAAGAAGCTTCTTGCAAAAAGGAAAGCTAAGGACAAAGCTAGGAAAGCGTTGGGGATGCAACTAGATGTCATGGAAGATGGTTATATTGATCACGAGTTATTCTCTCTTTCTAACATCAAGGGTAAGAATGATTTAAGAGTCGTTGATTCAACTGAATATGATGATGAAAATGATGAGATGGGAGAACAAGAAATTGGTGTAACCAAAGAGGAAAACCATGGGTCTTCAGATAGTGATCTTGACTCTGATGAAGAGCGCAGAAGGTATGATGCACACATTGAGGAATTGTTGGACCAGGCTTATGACAGCTTTGTTGCCAGAAAGGAAGGAAGTACAAAGCAGCGAAAACGTGCAAAAAAAGCCTATTCTGATGATGCCGAGCTGCTTAAGGAGGATGAGAATGGAGGTGATGGTCCATCTGATTATGACTCTGATGAGAACCTGGTAGATGAGGATAAGAATCCACTGATGGTATCTCTTGATTATGGTGGAGTGCCAACTGAAGAGGAGGTCGCAAACAAGTGGTTCAGTCAGGATATTTTTGCTGAAGCAGTAGAGGATGGAGATTTGAAGGAGTTGGTGGATAGCGAAGATGATATGCAGGTTGATAGACCAAAAGAAAAAGCTGCTGTTTCCAAGGAAGCCAAACCAAATATTTCAAAGAAAGAAAGAGAGAAGTTGAAAACTTCAACAAATGCAAGAGAAACTGATAAAGGAGATGATGGATTCGAGGTAGTCCCTGCCCCGGCTACAGATTCAAGCGATGATTCATCTTCTGATGAATCTGAGGATGAAGATCCTGACACAAAGGCTGAGATATTGGCATGTGCAAAGAAAATGCTGAGGAAAAAGCAAAGAGAGCAGATTCTTGATGATGCTTACAACAAATACATGTTCGATGATACAGGCTTGCCCTCGTGGTTTTTGGATGAGGAGCGAAGACACCGACGGCCAATAAAGCCTATAACCAAAGAGGAGGTTGCTGCAATGAAAGCACAGTTTAAGGAAATCGATGCCCGCCCTGCTAAGAAGGTAGCTGAAGCTAAAGCACGCAAGAAACGAGTTGCAATGAAGAAACTCGAGAAGGTTCGCAAGAAGGCAAATTCCATCTCAGACCAGGCTGATATATCAGATAGATCAAAGAGGAAGATGATCGATCAACTCTACAAAAAAGCAGTACCCGAGAGACCCAAAAAGGAATTTGTGGTTGCAAAGAAAGGAGTTCAAGTCAGGGTTGGAAAGGGTAAAGTCTTGGTCGATCGACGTATGAAGAAGGACATGAGGAAGCATGGAATGAGCAAGCAGGGAAAAGGTTCAAAGAAGGGCAAGAACTCCAAGGCTCCAAGAGGCAAGGGAGGATCTGCTAAGGCTTCGGGGAAGAAGGGAAGAAAAGGAAACAAATGA 2511 44.44 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLAQLDSKYNFLRSSHAVLDLCAAPGGWMQVAVERVPVGSLVVGVDLVPIAPVRGALAIEQDITRPECKARLKKIMNEKGCAAFDLVLHDGSPNVGGAWAQEAMSQNSLVIDSVKLATQLLAPKGTFVTKVFRSQDYSSVLYCLKQLFEKVEVDKPAASRSASAEIYVLGLRYKAPAKIDPRLLDVKHLFQGSVEPQRKVVDVLRGTKQKRHRDGYEDGDMTLRKESSASNFIWSDSPLEILGTVTTITFNDPACLLIKDHELTTEEVKTLCDDLGVLGKQDFKHLLKWRLHIRKALSPKQKVTSTSVNDAENEVKQDEDDKLLNEMEELTYAMERKKKREKKLLAKRKAKDKARKALGMQLDVMEDGYIDHELFSLSNIKGKNDLRVVDSTEYDDENDEMGEQEIGVTKEENHGSSDSDLDSDEERRRYDAHIEELLDQAYDSFVARKEGSTKQRKRAKKAYSDDAELLKEDENGGDGPSDYDSDENLVDEDKNPLMVSLDYGGVPTEEEVANKWFSQDIFAEAVEDGDLKELVDSEDDMQVDRPKEKAAVSKEAKPNISKKEREKLKTSTNARETDKGDDGFEVVPAPATDSSDDSSSDESEDEDPDTKAEILACAKKMLRKKQREQILDDAYNKYMFDDTGLPSWFLDEERRHRRPIKPITKEEVAAMKAQFKEIDARPAKKVAEAKARKKRVAMKKLEKVRKKANSISDQADISDRSKRKMIDQLYKKAVPERPKKEFVVAKKGVQVRVGKGKVLVDRRMKKDMRKHGMSKQGKGSKKGKNSKAPRGKGGSAKASGKKGRKGNK 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1986602 1992247 + CmaCh02G003910.1 Cma02g00391 288142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00391 836 MobiDBLite consensus disorder prediction 561 640 - -
Cma02g00391 836 Pfam Spb1 C-terminal domain 606 801 IPR012920 GO:0005634|GO:0006364|GO:0008168
Cma02g00391 836 MobiDBLite consensus disorder prediction 476 523 - -
Cma02g00391 836 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 1 808 - -
Cma02g00391 836 MobiDBLite consensus disorder prediction 783 836 - -
Cma02g00391 836 PANTHER RRNA METHYLTRANSFERASE-RELATED 1 808 - -
Cma02g00391 836 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 806 IPR028589 GO:0008649|GO:0031167
Cma02g00391 836 Coils Coil 712 732 - -
Cma02g00391 836 MobiDBLite consensus disorder prediction 421 454 - -
Cma02g00391 836 Pfam Domain of unknown function (DUF3381) 235 383 IPR024576 -
Cma02g00391 836 MobiDBLite consensus disorder prediction 431 454 - -
Cma02g00391 836 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
Cma02g00391 836 Pfam FtsJ-like methyltransferase 22 200 IPR002877 GO:0008168|GO:0032259
Cma02g00391 836 MobiDBLite consensus disorder prediction 477 506 - -
Cma02g00391 836 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 202 IPR029063 -
Cma02g00391 836 MobiDBLite consensus disorder prediction 561 611 - -
Cma02g00391 836 Gene3D Vaccinia Virus protein VP39 19 208 IPR029063 -
Cma02g00391 836 MobiDBLite consensus disorder prediction 796 816 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00391 K14857 SPB1, FTSJ3; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-] - csv:101209556 1313.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00391 Cma-Chr2:1986602 Cma04g02656 Cma-Chr4:18060212 1.95E-15 dispersed
Cma02g00391 Cma-Chr2:1986602 Cma14g00077 Cma-Chr14:364973 9.20E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g363 Blo02g00806 . . Bda08g00942 . . Bma05g00441 . . . Cma02g00391 . Car02g00254 Car20g00730 . . . . . . . . . . . . . . . . . Cone12ag1158 Cone8ag1207 . . Lsi10g00379 . Chy11g00372 . . . . . . . . . Sed01g0297 Cmo02g00398 Cmo20g00854 . . . . Cpe16g00247 Cpe05g01265 Bhi10g01995 Tan05g1293 Cmetu11g1187 . Hepe08g1009 . . . . . . . . . . Csa02g01268 . Cme11g00124
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007268 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00391 Cma_Chr02 FPKM 20.923504 21.559973 22.927271 21.457582 24.060764 27.448391 25.22187 39.725296 39.965206 36.710064