Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00394 ATGTTGTTGAAGTCGGAGATGACAATGTCGGAAAAACAGAGGACTCCAGTCAAATGGCGGCGAAGCCACGGTGACTGCCACAGCTTGTCGCCCGTCTCGAATCCAGCGAGCCGGGTCAATGATTTTCAGGATCTGCTTGCACCCGGAGGTTGGCCTGACTTGGCCAAGTACGAGTTCTCCTCCACCGTGACATGTTCGCCACCGCCGGAGGCGAACTCCGTGGCGGTCGGAGATATTCCGAAGAAGAGAAAGACCAACAAGAACAAGGAACTGAAATCCAAACTGGGTAATGCTGAATCTGACAAAAGAATCAAACCAAATAATAATGAAGAAGAAGAAGAAACAGAGAAAACAGAGCAAACAGAGCAAACAGAGGAAACAGAGACGTCGAAACAGAGTTCAAGAGCTTCTGATTACGTTCCTGTAAGAGCCCGTCGAGGCCAAGCTACAGATAGCCATAGTCTCGCAGAACGAGCGAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTACCTGGGTGTAACAAAATTGCAGGAAAAGCTGGAATGCTGGATGAAATTATAAATTATGTTCAATCTCTTCAGCAACAAGTGGAGTTCTTATCCATGAAGCTGGCCACTGCGAATCCGAGACTCGATTTCATCAATGTCGATGACCCTTTTTCTAAAATGGTGTTTCCGGCGACGGAAATCTCGCCGGAAACGGCTACTTCTTCATCGTACTTTAATCAGCTTGGAATCAGCTCAAGTTCTGTAACAGTCCCACAAACTCCATTGATCAGCTCGGCTTCTGTTACTCATTTGGAGCTCTGTTCAACTTGGGGAGATGACTTACAAAGGGTTTGCAGTGTGAGCTTTGAAGGAGGGCCGCCATTGTTGTCGCTATCGAGCTTTCTGTTGCAGCAATATCCAGGCATTGAAGATGAAAAGGAAACATTTGTAGACGACAAAGTTGTCGATATGAGCACTGCGAGGCTGATAAGGGTAGACCAATCTGGAAAGGGAGATTTTAGGAAGATTCAAGAAGCCATTGATTCTGTTCCACCTCGAAACAATGAACTCGTTTTCATTTGGATCAAACCCGGAACTTATAGGGAGAAAATTGTGGTGCCGGAGGACAAGCCGTTCATAACATTGAGCGGCAGCAAAGCCTCCGACACCATAATCACATGGAACCAAGGAAGAGATTTACTTCAATCTCCGGCCATCTCCGTCTTCGCCTCCGACTTCGTCGCCCGTTTTCTCACCATCCAGAACACATACGGCACCACCGGCATTGCGGTGGCGCTGAGGGTCTCCGCCGACAGAGCCGCCTTCTACGGCTGCCGTATCATATCCTTTCAAGACACCCTCCTAGACGACGTCGGAAGACACTACTTCAAGAACTGTTACATTGAAGGCGCCACCGATTTCATCTGCGGAAACGCAGCTTCTCTCTACGAGAAGTGTCATTTACACTCAATGTCGGAGAGAGGCGGGGCGATGACGGCGCAGCACCGTAACACAACGGCGGAGAACACTGGAACGGTATTCTACGGGGAATACAAATGCTATGGACCAGGGTCGAACAGAGCGAAAAGAGTAGCGTGGTCGCGCAGCCTCTCGACGGATGAGGCTGCAAAACTCTTCACCAAAGACATGATCGGGGGTCGAGGTTGGCTCCGACCTGCTCCGTCTCATTTCAAGAGGAGCTCCTCCACCATTGTCTAG 1722 49.07 MLLKSEMTMSEKQRTPVKWRRSHGDCHSLSPVSNPASRVNDFQDLLAPGGWPDLAKYEFSSTVTCSPPPEANSVAVGDIPKKRKTNKNKELKSKLGNAESDKRIKPNNNEEEEETEKTEQTEQTEETETSKQSSRASDYVPVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKLATANPRLDFINVDDPFSKMVFPATEISPETATSSSYFNQLGISSSSVTVPQTPLISSASVTHLELCSTWGDDLQRVCSVSFEGGPPLLSLSSFLLQQYPGIEDEKETFVDDKVVDMSTARLIRVDQSGKGDFRKIQEAIDSVPPRNNELVFIWIKPGTYREKIVVPEDKPFITLSGSKASDTIITWNQGRDLLQSPAISVFASDFVARFLTIQNTYGTTGIAVALRVSADRAAFYGCRIISFQDTLLDDVGRHYFKNCYIEGATDFICGNAASLYEKCHLHSMSERGGAMTAQHRNTTAENTGTVFYGEYKCYGPGSNRAKRVAWSRSLSTDEAAKLFTKDMIGGRGWLRPAPSHFKRSSSTIV 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1995000 2003022 - CmaCh02G003940.1 Cma02g00394 288145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00394 573 Coils Coil 107 128 - -
Cma02g00394 573 Coils Coil 81 101 - -
Cma02g00394 573 Gene3D - 328 511 IPR012334 -
Cma02g00394 573 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 510 560 - -
Cma02g00394 573 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 322 515 - -
Cma02g00394 573 SMART finulus 154 204 IPR011598 GO:0046983
Cma02g00394 573 MobiDBLite consensus disorder prediction 1 38 - -
Cma02g00394 573 MobiDBLite consensus disorder prediction 80 112 - -
Cma02g00394 573 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 198 IPR011598 GO:0046983
Cma02g00394 573 PANTHER PECTINESTERASE 11-RELATED 510 560 - -
Cma02g00394 573 PANTHER PECTINESTERASE 11-RELATED 322 515 - -
Cma02g00394 573 MobiDBLite consensus disorder prediction 11 25 - -
Cma02g00394 573 CDD bHLH_AtBPE_like 138 223 - -
Cma02g00394 573 SUPERFAMILY Pectin lyase-like 327 565 IPR011050 -
Cma02g00394 573 Pfam Helix-loop-helix DNA-binding domain 152 199 IPR011598 GO:0046983
Cma02g00394 573 MobiDBLite consensus disorder prediction 61 158 - -
Cma02g00394 573 Gene3D - 145 217 IPR036638 GO:0046983
Cma02g00394 573 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 217 IPR036638 GO:0046983
Cma02g00394 573 Pfam Pectinesterase 333 514 IPR000070 GO:0030599|GO:0042545
Cma02g00394 573 Gene3D - 512 568 IPR012334 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00394 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - cpep:111795128 416.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00394 Cma-Chr2:1995000 Cma02g01541 Cma-Chr2:8751985 1.05E-57 dispersed
Cma11g01093 Cma-Chr11:6019057 Cma02g00394 Cma-Chr2:1995000 3.81E-54 wgd
Cma12g00463 Cma-Chr12:2418868 Cma02g00394 Cma-Chr2:1995000 7.89E-96 wgd
Cma02g00394 Cma-Chr2:1995000 Cma20g00847 Cma-Chr20:4056892 1.33E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g375 . . . . . . . . . . Cma02g00394 . Car02g00256 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00375 . Chy11g00374 . . . . . . . . . Sed05g3617 . . . . . . . Cpe05g01263 Bhi10g02000 Tan05g1298 Cmetu11g1012 . Hepe08g1012 . . . . . . . . . . Csa02g01264 . Cme11g00120
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012104 0 3 0 0 0 1 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34434 PF01095 Pectinesterase 3.20E-41 CL0268 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00394 Cma_Chr02 FPKM 3.551854 3.958875 0.0 0.0 6.527946 6.138902 6.599702 0.0 0.0 0.0