Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00403 ATGGATGCGAAGCTGATTCAGCGACTGGAGTCGGCTGTGGCTCGGCTCGAGTCCTTGTCCACTGGATTCCGGCCCGGTGGTGCACCGGAGAGCGGCGAGGATGCGGTGTCCGACCCCTCGATTCTGGGTTTTGACGATATGATGGGACAGTACTTTGCAAGGGTTTATAGCGCCGCCGAGAAAATTGGGGGTCGGGTTCTTACGGTCACTGAGATTTTGAAAGAGGCCTTCTCTGTTCAAAGGGAGCTTCTTGTCAAGATCAAGCAAACTCAGAAACCTGACTTGGCAGGCTTAGCTGAATTTCTGAAGCCAATAAACGAAGTTATTATGAAAGCAAATGCACTTACAGAAGGAAGGAGATCTGATTTCTTCAACCATTTGAAAGCAGCAGCTGATAGTCTATCTGCTTTAGCTTGGATTGCATTTACTGGAAAAGACTGTGGTATGAGTATGCCGATCGCCCATGTCGAAGAAAGTTGGCAAATGGCTGAATTCTACAACAACAAAGTTCTGGTAGAGTACCGAAATAAAGATCCCGATCACGTCGAGTGGGCCAAAGCTATGAAAGAGCTCTATTTGCCAGGTTTAAGGGACTATGTCAAAAGTTTTTATCCTTTGGGACCAGTATGGAGTGTTACGGGGAAAAACGCTGCTGCTGCTGCTGCTCCTCCTCCTCCTAAAACATCAGCACCACGCACCCCGGCCGCACCTCCGCCCCCTCCAGCCTCGCTTTTCAGCTCAGAACCTTCTCAAGCTTCATCTTCCAAGCCAAAACAAGGGATGGCTGCTGTTTTCCAAGAAATTAATTCCGGGAAGCCTGTGACTTCAGGTCTTAAGAAAGTTACAGACGACATGAAGACGAAGAACCGTGCAGATAGAGTTGGTGTTGTTGGTTCCAGTGAGAAAGGTGGCCGTACCGCATCGCCTTCGTTTTCCAAAGCAGGTCCTCCAAAGTTAGAACTTCAAATGGGTCGAAAGTGGGTCGTCGAGAACCAGGTTGGAAGAAAAAACTTGGTCATTGATGATTGTGATGCTAAACAATCTGTATATATCTTTGGATGCAAAGATTCAGTTTTGCAGATTCAAGGGAAGGTCAACAATATAACGGTCGACAAGTGCACGAAAATGGGTGTCGTATTCACGGATGTTGTGGCTGCATTTGAGATTGTTAACTCCAACAGTGTTGAAGTGCAATGCCAGGGTTCTGCTCCAACTATTTCTGTGGACAATACTGGAGGCTGTGTATTGTATTTAAGCAAAGATTCTTTGGGGACTTCCATTACGACTGCCAAGTCGAGTGAGATCAATGTTTTGGTACCCGGGTCGGACGGTGATTGGGTACGGTCCCGTGTTCCTGCTTCTAAAGTTGAGCATGCTTTACCGCAACAGTTCGTTCATTCGTTTAAGGACGGGGGCTTCGAAACCACTCCGGTCTCTCACTCAGGAGGACTCCAACGCACCAGTCACCACCCCATCGCCATCGCCCAAACCGACTGCATTGGTGTG 1506 48.21 MDAKLIQRLESAVARLESLSTGFRPGGAPESGEDAVSDPSILGFDDMMGQYFARVYSAAEKIGGRVLTVTEILKEAFSVQRELLVKIKQTQKPDLAGLAEFLKPINEVIMKANALTEGRRSDFFNHLKAAADSLSALAWIAFTGKDCGMSMPIAHVEESWQMAEFYNNKVLVEYRNKDPDHVEWAKAMKELYLPGLRDYVKSFYPLGPVWSVTGKNAAAAAAPPPPKTSAPRTPAAPPPPPASLFSSEPSQASSSKPKQGMAAVFQEINSGKPVTSGLKKVTDDMKTKNRADRVGVVGSSEKGGRTASPSFSKAGPPKLELQMGRKWVVENQVGRKNLVIDDCDAKQSVYIFGCKDSVLQIQGKVNNITVDKCTKMGVVFTDVVAAFEIVNSNSVEVQCQGSAPTISVDNTGGCVLYLSKDSLGTSITTAKSSEINVLVPGSDGDWVRSRVPASKVEHALPQQFVHSFKDGGFETTPVSHSGGLQRTSHHPIAIAQTDCIGV 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2032625 2038552 + CmaCh02G004030.1 Cma02g00403 288154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00403 502 Gene3D - 40 216 IPR036222 -
Cma02g00403 502 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 1 482 IPR001837 GO:0003779|GO:0007010
Cma02g00403 502 Gene3D - 315 482 IPR016098 -
Cma02g00403 502 ProSiteProfiles C-CAP/cofactor C-like domain profile. 316 453 IPR017901 -
Cma02g00403 502 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 1 482 - -
Cma02g00403 502 MobiDBLite consensus disorder prediction 246 260 - -
Cma02g00403 502 ProSitePatterns CAP protein signature 1. 5 17 IPR018106 -
Cma02g00403 502 MobiDBLite consensus disorder prediction 297 317 - -
Cma02g00403 502 Pfam Adenylate cyclase associated (CAP) C terminal 316 480 IPR013912 GO:0003779|GO:0007010
Cma02g00403 502 SUPERFAMILY N-terminal domain of adenylylcyclase associated protein, CAP 41 241 IPR036222 -
Cma02g00403 502 MobiDBLite consensus disorder prediction 218 260 - -
Cma02g00403 502 SUPERFAMILY C-terminal domain of adenylylcyclase associated protein 316 482 IPR036223 -
Cma02g00403 502 MobiDBLite consensus disorder prediction 224 245 - -
Cma02g00403 502 SMART carp 392 429 IPR006599 -
Cma02g00403 502 SMART carp 354 391 IPR006599 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00403 K17261 CAP1_2, SRV2; adenylyl cyclase-associated protein - csv:101212738 809.675
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00403 Cma19g00662 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00662 Cma-Chr19:6963248 Cma02g00403 Cma-Chr2:2032625 0 wgd
Cma02g00403 Cma-Chr2:2032625 Cma20g00854 Cma-Chr20:4092253 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g586 Blo02g00802 . . Bda08g00928 . . Bma05g00467 . Cmo19g00676 . Cma02g00403 . Car02g00263 Car20g00737 Sed04g3936 . Cpe15g00536 Bhi05g01226 Tan02g0805 Cmetu01g2256 . Hepe02g0512 . . Cla02g00526 Cam02g0544 Cec02g0545 Cco02g0551 Clacu02g0545 Cmu02g0540 Cre02g0871 . . Cone3ag1160 Cone10ag1168 Lsi10g00362 . Chy11g00386 Cme01g01427 . . . . . . . . Sed01g0307 Cmo02g00408 Cmo20g00863 . Cma19g00662 . Car19g00505 . Cpe05g01254 Bhi10g02018 Tan05g1316 Cmetu11g1598 . Hepe08g1021 . . . . . . . . . Lsi11g01099 Csa02g01251 Chy01g00792 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002540 1 2 1 2 1 2 3 2 2 2 1 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00403 Cma_Chr02 FPKM 39.118923 44.696335 24.492186 23.265366 32.746208 31.498222 33.152039 24.963326 23.766357 23.671467