Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00405 ATGTCTGATTCATCGGATTCTCCGTCTCCTTCTTCCGAATCGGATTCGGATTCTGGTTCCTCTCCCCCGCCTCCGTCTGATTCTTCTCCACCTAAGCCCGAGTCCTCTCCGCCACCGCCGCCGGATGTTTCTCCGCCTCCTCCGACTGGTTCATCTCCACCTCCACCGAATGCATCGCCGCCACCGCCGAATGACTCAACGTCTTCATCTCCTCCATCTCCTCCATCTCCTCCTCCGCCTCCTCCACCGCCGCCACCTCCTCCGCCTTCTCCTCCACCTCCTGGATCCTCCAGGCATTCTTCTCCGCCGAAATCGATCTCCTCCTCGCCTCATTCCCGATCCTCAGACTCCTCATCCGGCGACTCTACTCCTGAGGTGGTTCCGATTATTGTAGGAGTGGCGGTGGCGGCAGGTTTTTTGCTATTCGCCATGGCACTGATATTCTTCGCTTGCAGCCGAAAGAAAAAGAAGCGAGAGAGTAATACCGTATACTACGATGATCGGCCTAATCAGAAAGGTGGGGACCCCTATTACAATGGAAGGAATCAGAACTGGAACGGTACGGGCGAACATTTCGTGAACATACCGCCAGCCACCGGCGGAGGGCAAGGAGGAGGATGGCCACCGCCAGCCACCGGCGGAGGGCAAGGAGGAGGATGGCCACCGCCAGCCACCGGCGGAGGGCAAGGAGGAGGATGGCCACCGCCAGCCACCGGCGGAGGGCAAGGAGGAGTATGGCCACCGCCAGCCACCGGCGGAGGGCAAGGAGGAGTATGGCCACCGCCGCCGCCACCACCGGGATTATTAAGCAGCGACATGAGCTCAAGCTTCTCAGGGCCACATGGGCCACCGTTACCACCGCCACACCCGTCGGTGGCGCTGGGGTTCAATAAAAACACGTTCACATTTGACGAGCTGATGGCAGCGACAGGCGGATTCTCTCCGGCGAACTTGTTAGGGCAAGGCGGATTCGGGTACGTTCATAAAGGAGTGCTGCCCAACGGCAAGGAAATTGCCGTAAAAAGCCTGAAAACAGGTAGCGGGCAAGGAGATCGGGAATTCGCGGCGGAAGTAGAGATTATCAGCCGCGTCCACCACCGTCATTTGGTGTCCCTCGTCGGTTACTGCATGACCAATGATCGGAAGATGTTGGTGTACGAATTTGTTCCTAATAACAACCTCGATTTCCACCTTCATGGGGAGGGGCGCCCGTCGATGCCGTGGTCGATGAGGGTCAAGATCGCACTCGGTGCAGCTAAGGGTCTATCCTACCTCCACGAAGACTGTCATCCTCGCATCATCCATAGAGACATTAAGACGGCAAATATTCTTATAGACATGAGTTTTGAAGCAAAGGTGGCTGATTTTGGATTGGCTAAGCTCAACCAGGACAATTACACTCATGTATCAACTCGTGTTATGGGTACATTTGGTTATTTGGCTCCGGAGTATGCATCAAGTGGGAAGCTAACAGAGAAATCAGACGTATTTTCATACGGAGTAATGCTTTTGGAGATCATAACTGGAAAACGACCCGTGGACGCATCCGGGGAGCTGATGGAGGACAGCTTAGTGGATTGGGCGAGGCCTCTATGCTTGAAAGCAATGACTGAAGGAGCCTACGAGGCGTTGGCAGATCCAAGATTGGAGAAGGACTACGACGCTCAGGAAATGGCATGCATGGTGGCTTGTGCTGCTGCATGCATTCGCCATTCTGCTAAACGCCGTCCCAAAATGAGCCAAGTTGTGCGGGCACTGGAAGGCGACGTATCGATGGAGGATTTGAACGACGGAGTAAAGCCAGGGCAAAGCTCATACTTTGGCTCCGGTACGTCGTCGGATTACGACGCAAGCTCTTACAGCGCCGACATGAAAAGGTTCAGAAAGGTAGCGTTGGAAAGCCGGGAGTACACAAGCAGTGATTATGGTGGGACGAGCGAGTATGGGCTAAACCCATCTGCGACGAGTAGTGACAATAGCCAGAAGCCAAGCCAAGCGTCGTCGCCCAATTTACAGCCCAACAAACCCTAA 2031 55.05 MSDSSDSPSPSSESDSDSGSSPPPPSDSSPPKPESSPPPPPDVSPPPPTGSSPPPPNASPPPPNDSTSSSPPSPPSPPPPPPPPPPPPPSPPPPGSSRHSSPPKSISSSPHSRSSDSSSGDSTPEVVPIIVGVAVAAGFLLFAMALIFFACSRKKKKRESNTVYYDDRPNQKGGDPYYNGRNQNWNGTGEHFVNIPPATGGGQGGGWPPPATGGGQGGGWPPPATGGGQGGGWPPPATGGGQGGVWPPPATGGGQGGVWPPPPPPPGLLSSDMSSSFSGPHGPPLPPPHPSVALGFNKNTFTFDELMAATGGFSPANLLGQGGFGYVHKGVLPNGKEIAVKSLKTGSGQGDREFAAEVEIISRVHHRHLVSLVGYCMTNDRKMLVYEFVPNNNLDFHLHGEGRPSMPWSMRVKIALGAAKGLSYLHEDCHPRIIHRDIKTANILIDMSFEAKVADFGLAKLNQDNYTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLEIITGKRPVDASGELMEDSLVDWARPLCLKAMTEGAYEALADPRLEKDYDAQEMACMVACAAACIRHSAKRRPKMSQVVRALEGDVSMEDLNDGVKPGQSSYFGSGTSSDYDASSYSADMKRFRKVALESREYTSSDYGGTSEYGLNPSATSSDNSQKPSQASSPNLQPNKP 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2049807 2053141 - CmaCh02G004050.1 Cma02g00405 288156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00405 676 SMART serkin_6 313 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00405 676 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 6 644 - -
Cma02g00405 676 ProSiteProfiles Protein kinase domain profile. 313 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma02g00405 676 MobiDBLite consensus disorder prediction 176 190 - -
Cma02g00405 676 SUPERFAMILY Protein kinase-like (PK-like) 288 586 IPR011009 -
Cma02g00405 676 MobiDBLite consensus disorder prediction 1 22 - -
Cma02g00405 676 MobiDBLite consensus disorder prediction 636 676 - -
Cma02g00405 676 MobiDBLite consensus disorder prediction 1 123 - -
Cma02g00405 676 PRINTS Proline rich extensin signature 3 24 - -
Cma02g00405 676 PRINTS Proline rich extensin signature 24 40 - -
Cma02g00405 676 PRINTS Proline rich extensin signature 44 61 - -
Cma02g00405 676 PRINTS Proline rich extensin signature 68 93 - -
Cma02g00405 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Cma02g00405 676 Gene3D Phosphorylase Kinase; domain 1 291 388 - -
Cma02g00405 676 MobiDBLite consensus disorder prediction 602 618 - -
Cma02g00405 676 Pfam Protein tyrosine and serine/threonine kinase 318 586 IPR001245 GO:0004672|GO:0006468
Cma02g00405 676 MobiDBLite consensus disorder prediction 638 676 - -
Cma02g00405 676 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 6 644 - -
Cma02g00405 676 MobiDBLite consensus disorder prediction 157 286 - -
Cma02g00405 676 MobiDBLite consensus disorder prediction 254 269 - -
Cma02g00405 676 MobiDBLite consensus disorder prediction 100 123 - -
Cma02g00405 676 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Cma02g00405 676 MobiDBLite consensus disorder prediction 23 99 - -
Cma02g00405 676 MobiDBLite consensus disorder prediction 593 618 - -
Cma02g00405 676 Gene3D Transferase(Phosphotransferase) domain 1 389 599 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00405 Cma20g00855 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00405 Cma-Chr2:2049807 Cma10g00621 Cma-Chr10:2859964 0 dispersed
Cma02g00405 Cma-Chr2:2049807 Cma20g00855 Cma-Chr20:4104105 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68323 PF07714 PK_Tyr_Ser-Thr 1.80E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00405 - - csv:101217306 737.643