Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma02g00405 | ATGTCTGATTCATCGGATTCTCCGTCTCCTTCTTCCGAATCGGATTCGGATTCTGGTTCCTCTCCCCCGCCTCCGTCTGATTCTTCTCCACCTAAGCCCGAGTCCTCTCCGCCACCGCCGCCGGATGTTTCTCCGCCTCCTCCGACTGGTTCATCTCCACCTCCACCGAATGCATCGCCGCCACCGCCGAATGACTCAACGTCTTCATCTCCTCCATCTCCTCCATCTCCTCCTCCGCCTCCTCCACCGCCGCCACCTCCTCCGCCTTCTCCTCCACCTCCTGGATCCTCCAGGCATTCTTCTCCGCCGAAATCGATCTCCTCCTCGCCTCATTCCCGATCCTCAGACTCCTCATCCGGCGACTCTACTCCTGAGGTGGTTCCGATTATTGTAGGAGTGGCGGTGGCGGCAGGTTTTTTGCTATTCGCCATGGCACTGATATTCTTCGCTTGCAGCCGAAAGAAAAAGAAGCGAGAGAGTAATACCGTATACTACGATGATCGGCCTAATCAGAAAGGTGGGGACCCCTATTACAATGGAAGGAATCAGAACTGGAACGGTACGGGCGAACATTTCGTGAACATACCGCCAGCCACCGGCGGAGGGCAAGGAGGAGGATGGCCACCGCCAGCCACCGGCGGAGGGCAAGGAGGAGGATGGCCACCGCCAGCCACCGGCGGAGGGCAAGGAGGAGGATGGCCACCGCCAGCCACCGGCGGAGGGCAAGGAGGAGTATGGCCACCGCCAGCCACCGGCGGAGGGCAAGGAGGAGTATGGCCACCGCCGCCGCCACCACCGGGATTATTAAGCAGCGACATGAGCTCAAGCTTCTCAGGGCCACATGGGCCACCGTTACCACCGCCACACCCGTCGGTGGCGCTGGGGTTCAATAAAAACACGTTCACATTTGACGAGCTGATGGCAGCGACAGGCGGATTCTCTCCGGCGAACTTGTTAGGGCAAGGCGGATTCGGGTACGTTCATAAAGGAGTGCTGCCCAACGGCAAGGAAATTGCCGTAAAAAGCCTGAAAACAGGTAGCGGGCAAGGAGATCGGGAATTCGCGGCGGAAGTAGAGATTATCAGCCGCGTCCACCACCGTCATTTGGTGTCCCTCGTCGGTTACTGCATGACCAATGATCGGAAGATGTTGGTGTACGAATTTGTTCCTAATAACAACCTCGATTTCCACCTTCATGGGGAGGGGCGCCCGTCGATGCCGTGGTCGATGAGGGTCAAGATCGCACTCGGTGCAGCTAAGGGTCTATCCTACCTCCACGAAGACTGTCATCCTCGCATCATCCATAGAGACATTAAGACGGCAAATATTCTTATAGACATGAGTTTTGAAGCAAAGGTGGCTGATTTTGGATTGGCTAAGCTCAACCAGGACAATTACACTCATGTATCAACTCGTGTTATGGGTACATTTGGTTATTTGGCTCCGGAGTATGCATCAAGTGGGAAGCTAACAGAGAAATCAGACGTATTTTCATACGGAGTAATGCTTTTGGAGATCATAACTGGAAAACGACCCGTGGACGCATCCGGGGAGCTGATGGAGGACAGCTTAGTGGATTGGGCGAGGCCTCTATGCTTGAAAGCAATGACTGAAGGAGCCTACGAGGCGTTGGCAGATCCAAGATTGGAGAAGGACTACGACGCTCAGGAAATGGCATGCATGGTGGCTTGTGCTGCTGCATGCATTCGCCATTCTGCTAAACGCCGTCCCAAAATGAGCCAAGTTGTGCGGGCACTGGAAGGCGACGTATCGATGGAGGATTTGAACGACGGAGTAAAGCCAGGGCAAAGCTCATACTTTGGCTCCGGTACGTCGTCGGATTACGACGCAAGCTCTTACAGCGCCGACATGAAAAGGTTCAGAAAGGTAGCGTTGGAAAGCCGGGAGTACACAAGCAGTGATTATGGTGGGACGAGCGAGTATGGGCTAAACCCATCTGCGACGAGTAGTGACAATAGCCAGAAGCCAAGCCAAGCGTCGTCGCCCAATTTACAGCCCAACAAACCCTAA | 2031 | 55.05 | MSDSSDSPSPSSESDSDSGSSPPPPSDSSPPKPESSPPPPPDVSPPPPTGSSPPPPNASPPPPNDSTSSSPPSPPSPPPPPPPPPPPPPSPPPPGSSRHSSPPKSISSSPHSRSSDSSSGDSTPEVVPIIVGVAVAAGFLLFAMALIFFACSRKKKKRESNTVYYDDRPNQKGGDPYYNGRNQNWNGTGEHFVNIPPATGGGQGGGWPPPATGGGQGGGWPPPATGGGQGGGWPPPATGGGQGGVWPPPATGGGQGGVWPPPPPPPGLLSSDMSSSFSGPHGPPLPPPHPSVALGFNKNTFTFDELMAATGGFSPANLLGQGGFGYVHKGVLPNGKEIAVKSLKTGSGQGDREFAAEVEIISRVHHRHLVSLVGYCMTNDRKMLVYEFVPNNNLDFHLHGEGRPSMPWSMRVKIALGAAKGLSYLHEDCHPRIIHRDIKTANILIDMSFEAKVADFGLAKLNQDNYTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLEIITGKRPVDASGELMEDSLVDWARPLCLKAMTEGAYEALADPRLEKDYDAQEMACMVACAAACIRHSAKRRPKMSQVVRALEGDVSMEDLNDGVKPGQSSYFGSGTSSDYDASSYSADMKRFRKVALESREYTSSDYGGTSEYGLNPSATSSDNSQKPSQASSPNLQPNKP | 676 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2049807 | 2053141 | - | CmaCh02G004050.1 | Cma02g00405 | 288156 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma02g00405 | 676 | SMART | serkin_6 | 313 | 549 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma02g00405 | 676 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 6 | 644 | - | - | |
Cma02g00405 | 676 | ProSiteProfiles | Protein kinase domain profile. | 313 | 592 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma02g00405 | 676 | MobiDBLite | consensus disorder prediction | 176 | 190 | - | - | |
Cma02g00405 | 676 | SUPERFAMILY | Protein kinase-like (PK-like) | 288 | 586 | IPR011009 | - | |
Cma02g00405 | 676 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cma02g00405 | 676 | MobiDBLite | consensus disorder prediction | 636 | 676 | - | - | |
Cma02g00405 | 676 | MobiDBLite | consensus disorder prediction | 1 | 123 | - | - | |
Cma02g00405 | 676 | PRINTS | Proline rich extensin signature | 3 | 24 | - | - | |
Cma02g00405 | 676 | PRINTS | Proline rich extensin signature | 24 | 40 | - | - | |
Cma02g00405 | 676 | PRINTS | Proline rich extensin signature | 44 | 61 | - | - | |
Cma02g00405 | 676 | PRINTS | Proline rich extensin signature | 68 | 93 | - | - | |
Cma02g00405 | 676 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 433 | 445 | IPR008271 | GO:0004672|GO:0006468 | |
Cma02g00405 | 676 | Gene3D | Phosphorylase Kinase; domain 1 | 291 | 388 | - | - | |
Cma02g00405 | 676 | MobiDBLite | consensus disorder prediction | 602 | 618 | - | - | |
Cma02g00405 | 676 | Pfam | Protein tyrosine and serine/threonine kinase | 318 | 586 | IPR001245 | GO:0004672|GO:0006468 | |
Cma02g00405 | 676 | MobiDBLite | consensus disorder prediction | 638 | 676 | - | - | |
Cma02g00405 | 676 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 | 6 | 644 | - | - | |
Cma02g00405 | 676 | MobiDBLite | consensus disorder prediction | 157 | 286 | - | - | |
Cma02g00405 | 676 | MobiDBLite | consensus disorder prediction | 254 | 269 | - | - | |
Cma02g00405 | 676 | MobiDBLite | consensus disorder prediction | 100 | 123 | - | - | |
Cma02g00405 | 676 | ProSitePatterns | Protein kinases ATP-binding region signature. | 319 | 341 | IPR017441 | GO:0005524 | |
Cma02g00405 | 676 | MobiDBLite | consensus disorder prediction | 23 | 99 | - | - | |
Cma02g00405 | 676 | MobiDBLite | consensus disorder prediction | 593 | 618 | - | - | |
Cma02g00405 | 676 | Gene3D | Transferase(Phosphotransferase) domain 1 | 389 | 599 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g00405 | Cma20g00855 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00405 | Cma-Chr2:2049807 | Cma10g00621 | Cma-Chr10:2859964 | 0 | dispersed | |
Cma02g00405 | Cma-Chr2:2049807 | Cma20g00855 | Cma-Chr20:4104105 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68323 | PF07714 | PK_Tyr_Ser-Thr | 1.80E-47 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma02g00405 | - | - | csv:101217306 | 737.643 |