Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00420 ATGGAGGACTGCATCAGCAGCGATGAAGACTACTATGACTCCGATCGAGAATCTCTCCACGGCCTCGAGAACGAGGACTCTGAAATTCAGTGGATTCCTAAAAGTTCTGCGACTAAGGTTATTACGAAGGAATGTCTCCTTGCGGCACAGAAGGAGGATATGCGTAGAGTAATGGATATGTTATCATTGAGGGAATACCATGCTCGGACCTTACTCATTCATTACCGATGGGATGTGGAGAAATTGTTTGCAGTACTTGTGGAGAAAGGGAGACATCATTTGTTTGCTACATCTGGTGTTACTATGATTGGGAATCAAAGTATTAGCTCCTCTGAGCCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTTCATGGCAATGATGCAACTAGAGTTGACTGTGGCCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAACGAGGGTCAAAGTCGGAGAATTAGATGCATGGCTCATAAATGTAATGCTATTTGCGATGAAGCTGTTGTTAGGAATCTAGTTAGTAAAAGGCATCCGGATCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCGTACATTGAGGATAACAAGAGAGTCAAATGGTGTCCGAGTACTCCTCACTGTGGTAACGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGCGGTCTTCAATTTTGTTTCAGTTGCTTATCAGAGGCTCACTCACCATGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGTCGAGATGAATCCGAAACAGTTAACTGGATGACAGTACATACAAAACCCTGTCCAAAGTGCCACAAACCCGTCGAGAAGAATGGTGGCTGTAACCTTGTCAGTTGCATCTGTGGACAAGCATTTTGTTGGCTGTGTGGTGGAGCTACCGGTCGAGAACACACTTGGTCGAGTATTTCTGGTCACAGTTGTGGGCGTTACAAAGAAGAATCAGCACAAAAAGCTGAAAGAGCAAAACGGGATTTGTATCGCTATATGCACTATCATAATCGATACAAAGCTCATACAGATTCTTGTAAGCTGGAAAGCAAATTGAAGGAATCCATACAAGAGAAGATTTCGATATCTGAAGAGAGGGAATCCATGCTGAGAGATTTTAGTTGGGTAAACAATGGACTTCATAGGCTTTTCAGATCAAGGCGGGTTTTATCATATTCTTACCCATTTGCATTCTATATGTTCGGGGACGAGCTATTCAAAGACGAGATGACCGAGGAGGAAAGGGAAATAAAGCAACATCTTTTTGAGGACCAACAGCAACAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTCTTAGAGGAACCGTTTGATCAATACGCCAAAGATAAGGTAATGGAGATAAGGATGCAAGTCATCAATCTGTCCGTTATCACCGATACCCTTTGCAAGAAGATGTATGACTGTATTGAAAATGATCTTCTGGGTTCTCTTGAACTGGGTATACACAATATCGCTCCGTACAAGTCGAAAGGAATCGAGAAAGCTCTGGAACTTTCAGCTTGTTGGAACAGCAAAACGAATACTACTATTGATAAATATCTTCCATCAGATTGTAGTACAAGTGGAGGATTGTCGGAACGGGATCGTCTGTCTGGTTTGAACTCCGAAGAGAATGGATGCTCTTCTAGGAAGCGTGCCAGAGCAGACGTTGTTACTGGCAACTTTTTTGATCTAAACTTGCCTGCTGAGGTGGTTGACAGAAACTAA 1773 42.24 MEDCISSDEDYYDSDRESLHGLENEDSEIQWIPKSSATKVITKECLLAAQKEDMRRVMDMLSLREYHARTLLIHYRWDVEKLFAVLVEKGRHHLFATSGVTMIGNQSISSSEPSSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWMTVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESAQKAERAKRDLYRYMHYHNRYKAHTDSCKLESKLKESIQEKISISEERESMLRDFSWVNNGLHRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEEEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYAKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKTNTTIDKYLPSDCSTSGGLSERDRLSGLNSEENGCSSRKRARADVVTGNFFDLNLPAEVVDRN 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2129241 2133606 - CmaCh02G004200.1 Cma02g00420 288171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00420 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 204 IPR013083 -
Cma02g00420 590 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 516 IPR031127 GO:0004842|GO:0016567
Cma02g00420 590 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 516 - -
Cma02g00420 590 SUPERFAMILY RING/U-box 260 326 - -
Cma02g00420 590 Gene3D - 248 496 - -
Cma02g00420 590 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Cma02g00420 590 SMART ibrneu5 190 252 IPR002867 -
Cma02g00420 590 SMART ibrneu5 260 325 IPR002867 -
Cma02g00420 590 SUPERFAMILY RING/U-box 191 259 - -
Cma02g00420 590 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Cma02g00420 590 Pfam Ariadne domain 329 590 IPR045840 -
Cma02g00420 590 SUPERFAMILY RING/U-box 114 202 - -
Cma02g00420 590 MobiDBLite consensus disorder prediction 540 561 - -
Cma02g00420 590 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00420 Cma-Chr2:2129241 Cma17g00596 Cma-Chr17:4947053 4.41E-60 dispersed
Cma02g00420 Cma-Chr2:2129241 Cma20g00867 Cma-Chr20:4161716 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00420 K11968 - csv:101205066 1140.56