Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma02g00427 ATGGATGGGCTTCTGAAGAAGTTTTTTCATGAGAAGCCTTCTTCTTCGGTTGGTAATGAGGATTTTAACCCTGAATATTCTTTTGCAATTGAGTATACAGGTCCTGGAATCAATTACGACATTCCCCGTGCAGTTCCTATCAATATCGATTATATTCCAACTGCTTCTGTTGTTGTTTCATCGTCTCAGTTCAGGGATGATGTATCAACGCTTCCAGTTATAGAACCCATCGTTGGTAAATTTAGTAGGAGCTCAAGTTTGAAAGCCAATTTAGTGATTTCTTCAACCTCTGAAATCCAGGAAGATGGGCCTGTTTGCCTTGATGCCATTAAGAAAGATAATGGGAAAGATAAATGTGATATCATTGAAAGTTCTGGTGAACTTGAGAATTTCAATAAGCTAAAGGGAAGATTAGAAGGCGGGTTAGAATCACTGGAAATTAAGAATGAAGAGGATTTTCAAGGTTACACGAATTCGAGTGATTCAGAATCGGCAGAATCGGGTTTGAGCTCGTCTTCTGGGATTTTTGCTGTAAGAGAGGAAGAGGAAGTTGAAAATGAAATCCAGCCTTGGCATGGCAGGAAGCCATCAGCTGTTACTTTTCTGGATCCCCATTTGAGCAGCACGATTTCTGACGAGGCAGAATCGAGTCAATCTGATGCTGAAAGTATCCATGACATGCCAAGAGCTGAAAGGAAGGGGAAGAAAGGATCGTGCTACTACTGCCTTAAAGGAAACCGTTTCACTGAAAAGGAAGAGTGTATTGTCTGTGGAGCCAAATATTGTATTGTCTGTGTAATTAGGGCAATGGGATCAATGCCAGAAGGAAGAAAGTGTATCACTTGTATTGGGTTCAGGATTGATGAATCAAGAAGAAACAACCTGGGTAAGTGCACTAAAGTGCTCAAGAGGCTGTTTACTGACTTGGAAGTTAAGAACATTCTGAGTCGGGAAAAAGAGTGTGAAATAAATCAGATACCTGCAAGACTTGTTTATATCAATGACCATCCTTTAAGTAGACAGGAACTGCTTATGCTGCGAAGTTGCCAAAAGCCACCAAAGAATCTAAAACCAGGACGATATTGGTATGACAAAGAATCGGGCTTCTGGGGAAAGGAAGGACGTGGACCGTGTCAGATAGTTAGCACCCATCTAGAGGTAGGAGGTCGCATTAAGAGGGATGCTAGCAATGGCAATACAAATGTTTGCATCAATAATCGAGAGATCACGAAAAAAGAGCTGCGGATATTGAAGCTGGCTGGAGTACCTTGTGAAGGAAGACCTTCTTATTGGGTTAGCGCAGATGGATCATATCAGGAAGAGGGAATGAACAATGGGGGGAAAATATGGGACAAGCCTACAACGAAGCTTGCATGTGCCGTTTTTAATTTACCTATTCCTTCTAGTTCTGTTCATTCTGGAGAGGAAAAGGTGGATAAAGCTAGTTCTTCTCCTGAGCCGAAAATGCTTCATAAACTTCTACTTGTTGGCCATGACCAATCTGGCACAAGTACCATATTCAAGCAGGCCAAGCAAATATATAAAGTTCCTTTCTCTGATGACGAGCGTCAAGCCATTAAGTTCCTGATTCAAAGAAAATTATATTGGTATATCAGTATACTACTGGAAGGTCGGGAACGTTTTGAAGAAGAGGTTTTGATGGATGAGAAGAATAAACAACCTGTGAATGATCCGTCTACCTCATCAGCATCAGGGAGTGACGTTCAGTTTGAGCGTAAAACCATCTATTCCTTTGGCCCTAAGCTGAAAGTGTTCGCCGACTGGCTTCTTCAAGTCGTAGTGTCAGGTTACTTTGAGACAACATTCCCAGCAGCTACCCGTGTGTACGCCCAATCAGTGGAAGAGTTGTTGAAGGATGAAGCGTTTCAAGCCACATACAGTAGAAGGAATGAACTAGAAATGCTCCCAAGAGTTTCAACTTATTTCCTTGATCGGGCTGTTGACATTTCAAGCTCAGACTATGACCCTTCTGACAACGACATCTTGTATGCCGAGGGAATCTCCTCATGTAAGAGCCTCAGTGACATGGAGTTCTCGTTCCCCGAGTCACGACAAGACTCCCTTCTCGATCCACCTTATCAGCATGACTCGTCAATAAGGTACCAGCTGATTCGAGTCCATCCCAGTACCTTGGGAGAGAACTGCAAACTGTTGGAAATGTTTGAAGACATGAGCATTATCCTGTTTTGTGTTGCTCTGGTCGACTACGACGAATTCGACGAAGATGATAATGGAGTTTTAGTCAATCGGATGATCGCAAGCAAACAACTCTTCGAAAGGATCGTGACGGATCGAGCATCGAGTGGGAAGAACTTCCTTCTCATACTCAACAAGTTCGATCTGTTTGAAGAAAAAATCATCCAAGTTCCACTTTCGCAATGCGAGTGGTTCGACAACTTCAATCCAATGATCACGCCAAATTCTACCGGAAGAAGCAGCAGCAGCAGCAGCAGCACAAACCCGTCATTGGCTCAACGAGCGTTTCAGTACATAGCGGTGAAATTCAAGAGATTGTTCTATTCTCTAACAGACAAAAAGCTGTTTGTTTCACAAACTACAGGGATGGAACCTGAAAATGTGAATGCAGCTCTCAGATATGCGAGGGAGATAATCAAATGGGAAGTAGACAAGCCTAACATCAGCATTACTGAAATTTCAACTGCCAGTGCTGATGCAAGCAGCTTTTTATAG 2712 42.7 MDGLLKKFFHEKPSSSVGNEDFNPEYSFAIEYTGPGINYDIPRAVPINIDYIPTASVVVSSSQFRDDVSTLPVIEPIVGKFSRSSSLKANLVISSTSEIQEDGPVCLDAIKKDNGKDKCDIIESSGELENFNKLKGRLEGGLESLEIKNEEDFQGYTNSSDSESAESGLSSSSGIFAVREEEEVENEIQPWHGRKPSAVTFLDPHLSSTISDEAESSQSDAESIHDMPRAERKGKKGSCYYCLKGNRFTEKEECIVCGAKYCIVCVIRAMGSMPEGRKCITCIGFRIDESRRNNLGKCTKVLKRLFTDLEVKNILSREKECEINQIPARLVYINDHPLSRQELLMLRSCQKPPKNLKPGRYWYDKESGFWGKEGRGPCQIVSTHLEVGGRIKRDASNGNTNVCINNREITKKELRILKLAGVPCEGRPSYWVSADGSYQEEGMNNGGKIWDKPTTKLACAVFNLPIPSSSVHSGEEKVDKASSSPEPKMLHKLLLVGHDQSGTSTIFKQAKQIYKVPFSDDERQAIKFLIQRKLYWYISILLEGRERFEEEVLMDEKNKQPVNDPSTSSASGSDVQFERKTIYSFGPKLKVFADWLLQVVVSGYFETTFPAATRVYAQSVEELLKDEAFQATYSRRNELEMLPRVSTYFLDRAVDISSSDYDPSDNDILYAEGISSCKSLSDMEFSFPESRQDSLLDPPYQHDSSIRYQLIRVHPSTLGENCKLLEMFEDMSIILFCVALVDYDEFDEDDNGVLVNRMIASKQLFERIVTDRASSGKNFLLILNKFDLFEEKIIQVPLSQCEWFDNFNPMITPNSTGRSSSSSSSTNPSLAQRAFQYIAVKFKRLFYSLTDKKLFVSQTTGMEPENVNAALRYAREIIKWEVDKPNISITEISTASADASSFL 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2160407 2165457 + CmaCh02G004270.1 Cma02g00427 288178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma02g00427 903 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 15 901 - -
Cma02g00427 903 MobiDBLite consensus disorder prediction 153 172 - -
Cma02g00427 903 Gene3D - 680 884 IPR027417 -
Cma02g00427 903 Gene3D - 519 672 IPR011025 GO:0007165
Cma02g00427 903 SMART galpha_1 472 887 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma02g00427 903 Pfam G-protein alpha subunit 488 878 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma02g00427 903 ProSiteProfiles G-alpha domain profile. 489 890 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma02g00427 903 MobiDBLite consensus disorder prediction 210 229 - -
Cma02g00427 903 PRINTS Alpha G protein (transducin) signature 492 507 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma02g00427 903 PRINTS Alpha G protein (transducin) signature 731 759 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma02g00427 903 PRINTS Alpha G protein (transducin) signature 779 788 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma02g00427 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 880 IPR027417 -
Cma02g00427 903 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 15 901 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma02g00427 903 SUPERFAMILY Transducin (alpha subunit), insertion domain 518 671 IPR011025 GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma02g00427 - - - mcha:111017232 1423.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00427 Cma20g00879 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00427 Cma-Chr2:2160407 Cma03g01011 Cma-Chr3:7065219 3.45E-08 dispersed
Cma02g00427 Cma-Chr2:2160407 Cma20g00879 Cma-Chr20:4206037 0 wgd
Cma02g00427 Cma-Chr2:2160407 Cma07g00733 Cma-Chr7:3239396 1.82E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma02g00427 Cma_Chr02 FPKM 10.841211 11.893292 6.179999 6.121313 6.085854 5.463274 6.183669 2.197535 2.169517 2.484332